Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52845255..52847999-chr10:52848856..52851821,2	K562	blood:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12570410	1.00[EUR][1000 genomes]
rs12570681	1.00[EUR][1000 genomes]
rs12572997	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12573698	0.89[ASN][1000 genomes]
rs16913603	0.87[ASN][1000 genomes]
rs16913659	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16913674	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16913683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16913684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16913685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16913709	0.91[ASN][1000 genomes]
rs2339677	0.91[ASN][1000 genomes]
rs34106354	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57572714	1.00[EUR][1000 genomes]
rs58974161	1.00[EUR][1000 genomes]
rs74131723	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74131727	1.00[EUR][1000 genomes]
rs74131729	1.00[EUR][1000 genomes]
rs74131732	1.00[EUR][1000 genomes]
rs74131733	1.00[EUR][1000 genomes]
rs74131734	1.00[EUR][1000 genomes]
rs74131736	1.00[EUR][1000 genomes]
rs74131737	1.00[EUR][1000 genomes]
rs74131743	1.00[EUR][1000 genomes]
rs74131744	1.00[EUR][1000 genomes]
rs74131746	1.00[EUR][1000 genomes]
rs74131747	1.00[EUR][1000 genomes]
rs74131749	1.00[EUR][1000 genomes]
rs74131750	1.00[EUR][1000 genomes]
rs74131769	1.00[EUR][1000 genomes]
rs9414804	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv895394	chr10:52793177-52866503	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52840400-52852200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:52843600-52856200	Weak transcription	Aorta	Aorta
3	chr10:52844000-52851800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:52844000-52852200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:52844000-52877200	Weak transcription	Fetal Stomach	stomach
6	chr10:52849400-52853200	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr10:52849600-52850400	Enhancers	Colon Smooth Muscle	Colon
8	chr10:52849600-52853800	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr10:52849800-52850600	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr10:52850000-52850400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr10:52850200-52852200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:52850200-52852200	Weak transcription	Psoas Muscle	Psoas
13	chr10:52850200-52852200	Weak transcription	NHDF-Ad	bronchial
14	chr10:52850200-52863400	Weak transcription	NHLF	lung

Quick Search: