Variant report

Variant	rs74131749
Chromosome Location	chr10:52872974-52872975
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12570410	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12570681	1.00[EUR][1000 genomes]
rs12572997	1.00[EUR][1000 genomes]
rs16913659	1.00[EUR][1000 genomes]
rs16913674	1.00[EUR][1000 genomes]
rs16913683	1.00[EUR][1000 genomes]
rs16913684	1.00[EUR][1000 genomes]
rs16913685	1.00[EUR][1000 genomes]
rs16913696	1.00[EUR][1000 genomes]
rs34106354	1.00[EUR][1000 genomes]
rs57572714	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58974161	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74131723	1.00[EUR][1000 genomes]
rs74131727	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs74131729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs74131732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74131733	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74131734	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74131736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74131737	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74131743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74131744	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74131746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74131747	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74131748	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74131750	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74131769	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv825378	chr10:52855771-52908439	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52844000-52877200	Weak transcription	Fetal Stomach	stomach
2	chr10:52856600-52877200	Weak transcription	Colon Smooth Muscle	Colon
3	chr10:52857600-52877200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:52858800-52873000	Weak transcription	Aorta	Aorta
5	chr10:52867400-52876400	Weak transcription	Left Ventricle	heart
6	chr10:52867600-52876000	Weak transcription	Psoas Muscle	Psoas
7	chr10:52870400-52873000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:52870800-52876800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr10:52871400-52876800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr10:52871800-52873000	Weak transcription	NHDF-Ad	bronchial
11	chr10:52871800-52873800	Weak transcription	NHLF	lung
12	chr10:52871800-52875600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr10:52871800-52876800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr10:52871800-52877200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:52872000-52875600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr10:52872000-52876800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr10:52872200-52875600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr10:52872600-52873000	Enhancers	Fetal Brain Female	brain
19	chr10:52872600-52873800	Enhancers	Fetal Brain Male	brain
20	chr10:52872800-52873000	Bivalent Enhancer	Brain Hippocampus Middle	brain
21	chr10:52872800-52873800	Enhancers	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links