Variant report

Variant	rs74131736
Chromosome Location	chr10:52866638-52866639
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12570410	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12570681	1.00[EUR][1000 genomes]
rs12572997	1.00[EUR][1000 genomes]
rs16913659	1.00[EUR][1000 genomes]
rs16913674	1.00[EUR][1000 genomes]
rs16913683	1.00[EUR][1000 genomes]
rs16913684	1.00[EUR][1000 genomes]
rs16913685	1.00[EUR][1000 genomes]
rs16913696	1.00[EUR][1000 genomes]
rs34106354	1.00[EUR][1000 genomes]
rs57572714	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58974161	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74131723	1.00[EUR][1000 genomes]
rs74131727	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs74131729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs74131732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74131733	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74131734	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74131737	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74131743	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74131744	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74131746	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74131747	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74131748	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74131749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74131750	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74131769	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv825378	chr10:52855771-52908439	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52844000-52877200	Weak transcription	Fetal Stomach	stomach
2	chr10:52853000-52871200	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:52856600-52877200	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:52857600-52877200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:52858800-52873000	Weak transcription	Aorta	Aorta
6	chr10:52864200-52869000	Weak transcription	HUVEC	blood vessel
7	chr10:52864400-52868200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:52864400-52868400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:52864800-52870200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:52865600-52867200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:52865600-52867200	Enhancers	NHDF-Ad	bronchial
12	chr10:52866000-52868600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:52866200-52867400	Enhancers	Left Ventricle	heart
14	chr10:52866200-52867600	Enhancers	Psoas Muscle	Psoas
15	chr10:52866400-52866800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr10:52866400-52868200	Weak transcription	Osteobl	bone
17	chr10:52866600-52867800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:52866600-52868200	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links