Variant report

Variant	rs16913889
Chromosome Location	chr8:50832911-50832912
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10504095	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1385981	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1486250	1.00[AMR][1000 genomes]
rs16913161	1.00[AMR][1000 genomes]
rs16913802	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16914067	1.00[ASW][hapmap];1.00[LWK][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16914072	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16914073	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16914102	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16914116	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16914133	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16914197	1.00[ASW][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16914203	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16914226	1.00[AMR][1000 genomes]
rs16914261	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16914268	1.00[YRI][hapmap]
rs16914274	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16914289	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16914298	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50828200-50833800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:50828600-50836000	Weak transcription	Fetal Brain Female	brain
3	chr8:50828800-50834200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr8:50829800-50833400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr8:50830000-50833600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr8:50830200-50834800	Weak transcription	Brain Germinal Matrix	brain
7	chr8:50830600-50833200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr8:50830600-50833400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr8:50831200-50833200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr8:50831800-50834800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr8:50832000-50841800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr8:50832800-50833000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr8:50832800-50833000	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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