Variant report

Variant	rs16914261
Chromosome Location	chr8:50995340-50995341
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10504095	1.00[AMR][1000 genomes]
rs1385981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16913802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16913889	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16914067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16914072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16914073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16914102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16914116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16914133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16914197	1.00[AMR][1000 genomes]
rs16914203	1.00[AMR][1000 genomes]
rs16914226	1.00[AMR][1000 genomes]
rs16914274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16914289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16914298	1.00[AFR][1000 genomes]
rs16914508	1.00[AMR][1000 genomes]
rs1824463	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759613	chr8:50873293-51137995	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2758621	chr8:50886593-51137995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv611312	chr8:50930075-51011122	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv890871	chr8:50936174-51040022	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv890872	chr8:50946702-51032813	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50994800-50996600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr8:50995200-50995600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:50995200-50996000	Enhancers	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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