Variant report

Variant	rs16914957
Chromosome Location	chr11:25986830-25986831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1027139	0.86[EUR][1000 genomes]
rs10501027	1.00[ASN][1000 genomes]
rs11028985	1.00[ASN][1000 genomes]
rs12282542	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12282654	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12364146	1.00[ASN][1000 genomes]
rs12796585	1.00[ASN][1000 genomes]
rs1441511	1.00[ASN][1000 genomes]
rs16914910	1.00[ASN][1000 genomes]
rs17242747	1.00[ASN][1000 genomes]
rs17242753	1.00[ASN][1000 genomes]
rs17242774	1.00[ASN][1000 genomes]
rs17308523	1.00[ASN][1000 genomes]
rs17308621	1.00[ASN][1000 genomes]
rs1901416	1.00[ASN][1000 genomes]
rs6484186	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67141149	1.00[ASN][1000 genomes]
rs67333685	1.00[ASN][1000 genomes]
rs7106427	1.00[ASN][1000 genomes]
rs7123239	1.00[ASN][1000 genomes]
rs72872807	0.87[ASN][1000 genomes]
rs72872842	1.00[ASN][1000 genomes]
rs72875022	1.00[ASN][1000 genomes]
rs72875027	1.00[ASN][1000 genomes]
rs72875031	1.00[ASN][1000 genomes]
rs72875080	1.00[ASN][1000 genomes]
rs72875083	0.86[EUR][1000 genomes]
rs72875094	1.00[ASN][1000 genomes]
rs72876806	1.00[ASN][1000 genomes]
rs72876822	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72876823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72876824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72876833	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7932544	1.00[ASN][1000 genomes]
rs7936563	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7937836	1.00[ASN][1000 genomes]
rs973832	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv832091	chr11:25823826-26009887	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv469948	chr11:25859783-26026233	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1041778	chr11:25898574-26098141	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv897140	chr11:25905509-25991194	Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:25974400-25989400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:25979400-25988600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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