Variant report

Variant	rs72872807
Chromosome Location	chr11:25881327-25881328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10501027	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11028985	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12282542	0.87[ASN][1000 genomes]
rs12364146	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12796585	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12803523	0.86[EUR][1000 genomes]
rs1441511	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16914910	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16914957	0.87[ASN][1000 genomes]
rs17242747	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17242753	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17242774	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17308523	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17308621	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1901416	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6484186	0.87[ASN][1000 genomes]
rs67141149	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67333685	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7104765	0.87[EUR][1000 genomes]
rs7106427	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7113777	0.80[EUR][1000 genomes]
rs7123239	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72872842	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72875022	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72875027	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72875031	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72875080	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72875094	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72876806	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72876822	0.87[ASN][1000 genomes]
rs72876823	0.87[ASN][1000 genomes]
rs72876824	0.87[ASN][1000 genomes]
rs7932544	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7936563	0.87[ASN][1000 genomes]
rs7937836	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1041080	chr11:25585107-25931087	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1039190	chr11:25592509-25925352	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv540973	chr11:25592509-25925352	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv467774	chr11:25773322-25924809	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv553895	chr11:25773322-25924809	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv832091	chr11:25823826-26009887	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1039469	chr11:25853822-25918864	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1045348	chr11:25858848-25921010	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv469948	chr11:25859783-26026233	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:25878800-25882400	Weak transcription	HUVEC	blood vessel
2	chr11:25880400-25883000	Enhancers	Duodenum Mucosa	Duodenum
3	chr11:25881200-25882600	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr11:25881200-25882800	Enhancers	Fetal Intestine Small	intestine
5	chr11:25881200-25883200	Enhancers	Rectal Mucosa Donor 29	rectum

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