Variant report

Variant	rs17308621
Chromosome Location	chr11:25975224-25975225
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10501027	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11028985	1.00[ASN][1000 genomes]
rs12275759	0.80[EUR][1000 genomes]
rs12282542	1.00[ASN][1000 genomes]
rs12282654	0.86[ASN][1000 genomes]
rs12364146	1.00[ASN][1000 genomes]
rs12796585	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12803523	0.85[EUR][1000 genomes]
rs1441511	1.00[ASN][1000 genomes]
rs16914910	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16914957	1.00[ASN][1000 genomes]
rs17242747	1.00[ASN][1000 genomes]
rs17242753	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17242774	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17308523	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17308649	0.83[EUR][1000 genomes]
rs1901416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6484186	1.00[ASN][1000 genomes]
rs67141149	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67333685	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106427	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113777	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7123239	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127437	0.92[EUR][1000 genomes]
rs72872807	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72872842	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72875022	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72875027	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72875031	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72875080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72875094	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72876806	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72876822	1.00[ASN][1000 genomes]
rs72876823	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72876824	1.00[ASN][1000 genomes]
rs72876833	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72876856	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72876864	0.95[EUR][1000 genomes]
rs72876866	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72876871	0.82[EUR][1000 genomes]
rs7932544	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936563	1.00[ASN][1000 genomes]
rs7937836	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv832091	chr11:25823826-26009887	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv469948	chr11:25859783-26026233	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1041778	chr11:25898574-26098141	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv897140	chr11:25905509-25991194	Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv467776	chr11:25951319-25979162	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
8	nsv553897	chr11:25951319-25979162	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	n/a	n/a	inside rSNPs	diseases
9	nsv467777	chr11:25959082-25985507	Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
10	nsv553898	chr11:25959082-25985507	Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
11	esv3348528	chr11:25964425-25982438	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
12	nsv976484	chr11:25972455-25979070	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:25963200-25979200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:25973200-25979000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:25974400-25989400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:25974800-25975600	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr11:25975200-25975600	Weak transcription	Fetal Kidney	kidney

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