Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:26003273..26004302-chr11:26156241..26157265,8	MCF-7	breast:
2	chr11:26003473..26004143-chr11:26298150..26298895,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10501027	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12803523	0.81[EUR][1000 genomes]
rs16914910	0.81[EUR][1000 genomes]
rs17308621	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17308649	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1901416	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67333685	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7106427	0.88[EUR][1000 genomes]
rs7113777	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7127437	0.88[EUR][1000 genomes]
rs72875022	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs72875027	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs72875031	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs72875080	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72875094	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72876806	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72876833	0.96[EUR][1000 genomes]
rs72876864	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72876866	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72876871	0.86[EUR][1000 genomes]
rs7932544	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv832091	chr11:25823826-26009887	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv469948	chr11:25859783-26026233	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1041778	chr11:25898574-26098141	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26003400-26004200	Enhancers	Liver	Liver
2	chr11:26003400-26004200	Enhancers	Fetal Lung	lung
3	chr11:26003400-26004400	Enhancers	Hela-S3	cervix
4	chr11:26003400-26005200	Enhancers	GM12878-XiMat	blood
5	chr11:26003400-26006000	Enhancers	Primary B cells from peripheral blood	blood
6	chr11:26003600-26004200	Enhancers	NHDF-Ad	bronchial
7	chr11:26003800-26005400	Enhancers	Primary B cells from cord blood	blood
8	chr11:26004000-26004200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:26004000-26004200	Enhancers	Brain Hippocampus Middle	brain

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