Variant report

Variant	rs16918684
Chromosome Location	chr9:102495025-102495026
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16918670	1.00[AMR][1000 genomes]
rs60185871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60506060	1.00[AMR][1000 genomes]
rs73654125	1.00[AMR][1000 genomes]
rs73654127	1.00[AMR][1000 genomes]
rs73654131	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73654133	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73654138	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73654139	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893621	chr9:102342950-102585545	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102494200-102496200	Enhancers	Primary hematopoietic stem cells	blood
2	chr9:102494400-102495400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr9:102494400-102495800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr9:102494400-102495800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr9:102494400-102495800	Enhancers	Lung	lung
6	chr9:102494400-102495800	Enhancers	Psoas Muscle	Psoas
7	chr9:102494400-102496200	Enhancers	Fetal Muscle Leg	muscle
8	chr9:102494400-102496200	Enhancers	Left Ventricle	heart
9	chr9:102494600-102495800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr9:102494600-102495800	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr9:102494600-102496400	Enhancers	Fetal Heart	heart
12	chr9:102494800-102495200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:102494800-102495200	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr9:102494800-102495400	Enhancers	Primary B cells from cord blood	blood
15	chr9:102494800-102495600	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr9:102494800-102495600	Enhancers	Primary B cells from peripheral blood	blood
17	chr9:102494800-102495600	Enhancers	Fetal Stomach	stomach
18	chr9:102494800-102495800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr9:102495000-102495400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:102495000-102495400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:102495000-102495400	Active TSS	Pancreatic Islets	Pancreatic Islet
22	chr9:102495000-102495400	Active TSS	Ovary	ovary
23	chr9:102495000-102495400	Active TSS	Right Atrium	heart
24	chr9:102495000-102495400	Enhancers	NHLF	lung
25	chr9:102495000-102495600	Active TSS	Aorta	Aorta
26	chr9:102495000-102495600	Active TSS	Skeletal Muscle Male	skeletal muscle

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