Variant report

Variant	rs60185871
Chromosome Location	chr9:102484701-102484702
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16918670	1.00[AMR][1000 genomes]
rs16918684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60506060	1.00[AMR][1000 genomes]
rs73654125	1.00[AMR][1000 genomes]
rs73654127	1.00[AMR][1000 genomes]
rs73654131	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73654133	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73654138	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73654139	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893621	chr9:102342950-102585545	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	esv3426604	chr9:102483131-102485179	Weak transcription Flanking Active TSS Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102481800-102488200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:102483000-102489800	Weak transcription	Aorta	Aorta
3	chr9:102483200-102485000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr9:102483200-102485000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr9:102483200-102485000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr9:102483200-102485000	Weak transcription	Fetal Thymus	thymus
7	chr9:102483200-102485200	Weak transcription	Thymus	Thymus
8	chr9:102483200-102485800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr9:102483200-102489000	Weak transcription	Right Atrium	heart
10	chr9:102483400-102485000	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr9:102483600-102484800	Weak transcription	Primary B cells from cord blood	blood
12	chr9:102483600-102484800	Weak transcription	Primary B cells from peripheral blood	blood
13	chr9:102483600-102484800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr9:102483600-102485000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr9:102483600-102485000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr9:102483600-102485000	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr9:102483600-102485000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr9:102483600-102485000	Weak transcription	GM12878-XiMat	blood
19	chr9:102483600-102485200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr9:102483800-102485000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr9:102483800-102485000	Weak transcription	Dnd41	blood
22	chr9:102484200-102485800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr9:102484200-102486000	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr9:102484600-102485600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr9:102484600-102485600	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr9:102484600-102485800	Enhancers	H1 Cell Line	embryonic stem cell
27	chr9:102484600-102485800	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr9:102484600-102485800	Enhancers	Primary T cells from cord blood	blood
29	chr9:102484600-102486000	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr9:102484600-102486200	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr9:102484600-102486200	Enhancers	Primary T helper naive cells from peripheral blood	blood

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