Variant report

Variant	rs73654139
Chromosome Location	chr9:102548347-102548348
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16918670	1.00[AMR][1000 genomes]
rs16918684	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60185871	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60506060	1.00[AMR][1000 genomes]
rs73654125	1.00[AMR][1000 genomes]
rs73654127	1.00[AMR][1000 genomes]
rs73654131	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73654133	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73654138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893621	chr9:102342950-102585545	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv528025	chr9:102540386-102613672	Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv893622	chr9:102543355-102595685	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102545200-102548800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:102545400-102549000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr9:102546400-102548600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:102546600-102550800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr9:102547600-102549000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr9:102547600-102549000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr9:102547600-102549200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr9:102547600-102573400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr9:102547800-102548400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr9:102548000-102549000	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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