Variant report

Variant	rs16923059
Chromosome Location	chr8:59029723-59029724
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:59029385-59029800	H1-neurons	neurons:	n/a	n/a
2	POLR2A	chr8:59029415-59029812	H1-neurons	neurons:	n/a	n/a

Variant related genes	Relation type
ENSG00000242595	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11997240	0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1354814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16918704	0.80[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16923060	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2174727	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35612391	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6998468	1.00[CEU][hapmap];0.81[JPT][hapmap];0.95[EUR][1000 genomes]
rs7010734	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7820808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9792139	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59011000-59031600	Weak transcription	Liver	Liver
2	chr8:59011400-59035400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:59011600-59030800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:59011600-59031800	Weak transcription	Gastric	stomach
5	chr8:59011600-59044800	Weak transcription	Spleen	Spleen
6	chr8:59014800-59034400	Weak transcription	Fetal Brain Female	brain
7	chr8:59015200-59058200	Weak transcription	Aorta	Aorta
8	chr8:59015400-59036400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr8:59015400-59037000	Weak transcription	Psoas Muscle	Psoas
10	chr8:59015600-59030000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr8:59016600-59033600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:59016600-59046200	Weak transcription	Fetal Brain Male	brain
13	chr8:59019400-59036800	Weak transcription	Fetal Kidney	kidney
14	chr8:59020200-59032200	Weak transcription	Brain Germinal Matrix	brain
15	chr8:59020600-59032600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr8:59021600-59033400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr8:59021800-59040600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr8:59021800-59044200	Weak transcription	Fetal Lung	lung
19	chr8:59022400-59050000	Weak transcription	Ovary	ovary
20	chr8:59022800-59033400	Weak transcription	Fetal Muscle Trunk	muscle
21	chr8:59025600-59032000	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr8:59025800-59034200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr8:59026000-59050600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr8:59026200-59033600	Weak transcription	Right Ventricle	heart
25	chr8:59026200-59049800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr8:59026800-59030800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr8:59027400-59030000	Strong transcription	Fetal Stomach	stomach
28	chr8:59028000-59033400	Weak transcription	HSMMtube	muscle
29	chr8:59028000-59040800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr8:59028400-59030000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr8:59028400-59034200	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr8:59028600-59042000	Weak transcription	Lung	lung
33	chr8:59028800-59040600	Weak transcription	NHDF-Ad	bronchial
34	chr8:59029000-59031400	Weak transcription	HepG2	liver
35	chr8:59029000-59032200	Weak transcription	Fetal Heart	heart
36	chr8:59029000-59033400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr8:59029000-59033600	Weak transcription	HSMM	muscle
38	chr8:59029000-59058000	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr8:59029400-59035400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr8:59029600-59029800	Enhancers	Pancreatic Islets	Pancreatic Islet
41	chr8:59029600-59030800	Weak transcription	Fetal Muscle Leg	muscle
42	chr8:59029600-59030800	Weak transcription	Left Ventricle	heart
43	chr8:59029600-59033400	Weak transcription	Pancreas	Pancrea
44	chr8:59029600-59033400	Weak transcription	Right Atrium	heart

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