Variant report

Variant	rs35612391
Chromosome Location	chr8:59036570-59036571
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59035101..59037802-chr8:59049152..59050739,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11997240	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1354814	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16918704	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16923059	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16923060	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17175965	0.82[AMR][1000 genomes]
rs17254739	0.88[AFR][1000 genomes]
rs2174727	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6984700	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6998468	0.94[EUR][1000 genomes]
rs7010734	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7820808	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9792139	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59011600-59044800	Weak transcription	Spleen	Spleen
2	chr8:59015200-59058200	Weak transcription	Aorta	Aorta
3	chr8:59015400-59037000	Weak transcription	Psoas Muscle	Psoas
4	chr8:59016600-59046200	Weak transcription	Fetal Brain Male	brain
5	chr8:59019400-59036800	Weak transcription	Fetal Kidney	kidney
6	chr8:59021800-59040600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:59021800-59044200	Weak transcription	Fetal Lung	lung
8	chr8:59022400-59050000	Weak transcription	Ovary	ovary
9	chr8:59026000-59050600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:59026200-59049800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr8:59028000-59040800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:59028600-59042000	Weak transcription	Lung	lung
13	chr8:59028800-59040600	Weak transcription	NHDF-Ad	bronchial
14	chr8:59029000-59058000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr8:59032000-59047200	Weak transcription	Liver	Liver
16	chr8:59032000-59049200	Weak transcription	Brain Hippocampus Middle	brain
17	chr8:59033200-59045800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr8:59033800-59042000	Weak transcription	Fetal Stomach	stomach
19	chr8:59033800-59044800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr8:59033800-59046000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr8:59033800-59050200	Weak transcription	Pancreas	Pancrea
22	chr8:59034600-59036800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr8:59034600-59040600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr8:59034600-59040800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr8:59034800-59042200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr8:59034800-59054200	Weak transcription	Fetal Brain Female	brain
27	chr8:59035400-59037400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr8:59035600-59036600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr8:59035600-59040600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr8:59035600-59043000	Weak transcription	HSMMtube	muscle
31	chr8:59035800-59036600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
32	chr8:59035800-59036600	Weak transcription	HepG2	liver
33	chr8:59035800-59036800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr8:59035800-59036800	Weak transcription	Brain Substantia Nigra	brain
35	chr8:59035800-59037000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr8:59035800-59037000	Weak transcription	Right Atrium	heart
37	chr8:59035800-59040600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr8:59035800-59041600	Weak transcription	Right Ventricle	heart
39	chr8:59035800-59042200	Weak transcription	Gastric	stomach
40	chr8:59035800-59044800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr8:59036000-59040200	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr8:59036000-59040200	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr8:59036000-59040600	Weak transcription	Left Ventricle	heart
44	chr8:59036000-59040600	Weak transcription	GM12878-XiMat	blood
45	chr8:59036000-59040800	Weak transcription	HSMM	muscle
46	chr8:59036000-59041000	Weak transcription	Fetal Heart	heart
47	chr8:59036000-59042000	Weak transcription	Fetal Muscle Leg	muscle
48	chr8:59036000-59044600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr8:59036200-59037200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr8:59036200-59043600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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