Variant report

Variant	rs6998468
Chromosome Location	chr8:59047312-59047313
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11997240	0.84[JPT][hapmap];0.80[EUR][1000 genomes]
rs1354814	1.00[CEU][hapmap];0.81[JPT][hapmap];0.95[EUR][1000 genomes]
rs16918704	0.90[JPT][hapmap]
rs16923059	1.00[CEU][hapmap];0.81[JPT][hapmap];0.95[EUR][1000 genomes]
rs16923060	0.82[EUR][1000 genomes]
rs2174727	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs35612391	0.94[EUR][1000 genomes]
rs7010734	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7820808	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs9792139	1.00[CEU][hapmap];0.95[EUR][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59015200-59058200	Weak transcription	Aorta	Aorta
2	chr8:59022400-59050000	Weak transcription	Ovary	ovary
3	chr8:59026000-59050600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:59026200-59049800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr8:59029000-59058000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr8:59032000-59049200	Weak transcription	Brain Hippocampus Middle	brain
7	chr8:59033800-59050200	Weak transcription	Pancreas	Pancrea
8	chr8:59034800-59054200	Weak transcription	Fetal Brain Female	brain
9	chr8:59037200-59049200	Weak transcription	Brain Substantia Nigra	brain
10	chr8:59041400-59048200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr8:59041800-59058000	Weak transcription	Colon Smooth Muscle	Colon
12	chr8:59042200-59050200	Weak transcription	Lung	lung
13	chr8:59043200-59049000	Weak transcription	NHLF	lung
14	chr8:59043600-59049000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:59043600-59049000	Weak transcription	Osteobl	bone
16	chr8:59043600-59052600	Weak transcription	Esophagus	oesophagus
17	chr8:59044000-59048800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr8:59044000-59048800	Weak transcription	HSMM	muscle
19	chr8:59044000-59048800	Weak transcription	NHDF-Ad	bronchial
20	chr8:59044000-59049400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:59044000-59049600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:59044000-59050200	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr8:59044000-59052600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr8:59044000-59058000	Weak transcription	HSMMtube	muscle
25	chr8:59044400-59053400	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr8:59044600-59048800	Weak transcription	HepG2	liver
27	chr8:59044600-59049200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr8:59045000-59048200	Weak transcription	Fetal Lung	lung
29	chr8:59045000-59049400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr8:59045000-59053000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr8:59045000-59058000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr8:59045200-59050600	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr8:59045200-59058000	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr8:59046200-59050200	Weak transcription	Fetal Muscle Leg	muscle
35	chr8:59046200-59050400	Weak transcription	Stomach Smooth Muscle	stomach
36	chr8:59046400-59048200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr8:59046400-59050000	Weak transcription	Fetal Stomach	stomach
38	chr8:59046400-59050400	Weak transcription	Fetal Muscle Trunk	muscle
39	chr8:59046400-59050400	Weak transcription	Left Ventricle	heart
40	chr8:59046400-59050400	Weak transcription	Spleen	Spleen
41	chr8:59046400-59050600	Weak transcription	Right Atrium	heart
42	chr8:59046400-59050800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr8:59046400-59052800	Weak transcription	Right Ventricle	heart
44	chr8:59046400-59054200	Weak transcription	Psoas Muscle	Psoas
45	chr8:59046400-59058000	Weak transcription	Fetal Brain Male	brain
46	chr8:59046400-59058000	Weak transcription	Gastric	stomach
47	chr8:59046600-59052800	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr8:59046600-59053200	Weak transcription	Brain Germinal Matrix	brain
49	chr8:59047200-59049000	Weak transcription	Fetal Heart	heart

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