Variant report

Variant	rs16923959
Chromosome Location	chr8:59703690-59703691
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16923739	0.89[AMR][1000 genomes]
rs16923744	0.89[AMR][1000 genomes]
rs2634496	0.89[AMR][1000 genomes]
rs2634514	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2634516	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2634518	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2634528	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2693434	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2693438	0.89[AMR][1000 genomes]
rs2693440	0.89[AMR][1000 genomes]
rs2693448	0.89[AMR][1000 genomes]
rs2693449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2693451	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2726576	0.89[AMR][1000 genomes]
rs2726587	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2726602	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3110617	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59698200-59704000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr8:59698400-59705600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr8:59698800-59704000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:59700800-59703800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:59701200-59704200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:59701200-59704600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr8:59701400-59704600	Enhancers	Fetal Thymus	thymus
8	chr8:59701600-59704400	Enhancers	Primary T cells fromperipheralblood	blood
9	chr8:59701800-59705200	Enhancers	Dnd41	blood
10	chr8:59702000-59704000	Enhancers	Thymus	Thymus
11	chr8:59702200-59708400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr8:59702400-59704400	Enhancers	Primary T cells from cord blood	blood
13	chr8:59702400-59704400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr8:59702400-59704600	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr8:59702600-59704800	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr8:59702600-59704800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr8:59703000-59703800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr8:59703200-59703800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr8:59703200-59703800	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr8:59703200-59704000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr8:59703400-59704000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr8:59703600-59703800	Enhancers	Aorta	Aorta
23	chr8:59703600-59704200	Enhancers	Brain Germinal Matrix	brain
24	chr8:59703600-59704200	Enhancers	NHLF	lung
25	chr8:59703600-59705000	Enhancers	Osteobl	bone

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