Variant report

Variant	rs2634514
Chromosome Location	chr8:59679978-59679979
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16923682	0.83[AMR][1000 genomes]
rs16923739	0.94[AMR][1000 genomes]
rs16923744	0.94[AMR][1000 genomes]
rs16923959	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2634496	0.94[AMR][1000 genomes]
rs2634516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2634518	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2634528	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2693434	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2693438	0.94[AMR][1000 genomes]
rs2693440	0.94[AMR][1000 genomes]
rs2693448	0.94[AMR][1000 genomes]
rs2693449	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2693451	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2726576	0.94[AMR][1000 genomes]
rs2726587	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2726602	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3110617	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831325	chr8:59492580-59694443	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59679000-59681000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr8:59679000-59682200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:59679600-59680600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:59679600-59680800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr8:59679800-59680000	Enhancers	Stomach Smooth Muscle	stomach
6	chr8:59679800-59680400	Active TSS	Aorta	Aorta
7	chr8:59679800-59680800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:59679800-59680800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:59679800-59680800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr8:59679800-59680800	Flanking Active TSS	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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