Variant report
| Variant | rs2634528 |
|---|---|
| Chromosome Location | chr3:29126652-29126653 |
| allele | A/C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | E2F4 | chr3:29126506-29126706 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| MESTP4 | TF binding region |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs16923739 | 0.89[AMR][1000 genomes] |
| rs16923744 | 0.89[AMR][1000 genomes] |
| rs16923959 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2634496 | 0.89[AMR][1000 genomes] |
| rs2634514 | 0.94[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2634516 | 0.94[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2634518 | 0.94[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2693434 | 0.94[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2693438 | 0.89[AMR][1000 genomes] |
| rs2693440 | 0.89[AMR][1000 genomes] |
| rs2693448 | 0.89[AMR][1000 genomes] |
| rs2693449 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2693451 | 0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2726576 | 0.89[AMR][1000 genomes] |
| rs2726587 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2726602 | 0.94[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs3110617 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916364 | chr3:28468275-29146280 | Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv876653 | chr3:28819123-29366164 | Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv998023 | chr3:28939535-29207462 | Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv590024 | chr3:28947691-29192092 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv590025 | chr3:28947691-29201460 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
