Variant report

Variant	rs16924647
Chromosome Location	chr11:33732159-33732160
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:33730763-33732178	A549	lung:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:33730057..33732913-chr11:33741218..33744001,2	MCF-7	breast:
2	chr11:33730241..33733771-chr11:33754827..33758431,3	K562	blood:
3	chr11:33726536..33728687-chr11:33732022..33734323,2	K562	blood:
4	chr11:33722219..33726232-chr11:33726761..33732163,6	K562	blood:
5	chr11:33731840..33734773-chr11:33739797..33742664,2	K562	blood:

No data

Variant related genes	Relation type
CD59	TF binding region
ENSG00000205177	Chromatin interaction
ENSG00000085063	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10836112	1.00[ASN][1000 genomes]
rs11825259	1.00[ASN][1000 genomes]
rs12275719	1.00[ASN][1000 genomes]
rs12280748	1.00[ASN][1000 genomes]
rs12291756	1.00[ASN][1000 genomes]
rs16924660	1.00[ASN][1000 genomes]
rs16924667	1.00[ASN][1000 genomes]
rs16924765	1.00[ASN][1000 genomes]
rs60565360	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832113	chr11:33609202-33767781	Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33723000-33746000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:33723200-33737400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:33723200-33744400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:33723200-33744400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr11:33723400-33735000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:33723400-33741400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr11:33723400-33745000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:33723400-33745800	Weak transcription	Primary B cells from peripheral blood	blood
9	chr11:33723400-33746000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr11:33723400-33753400	Weak transcription	Primary B cells from cord blood	blood
11	chr11:33725800-33732200	Genic enhancers	Muscle Satellite Cultured Cells	--
12	chr11:33726000-33732400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr11:33726000-33733200	Strong transcription	Fetal Stomach	stomach
14	chr11:33726200-33732400	Genic enhancers	HUVEC	blood vessel
15	chr11:33726400-33739800	Strong transcription	Fetal Muscle Trunk	muscle
16	chr11:33726600-33734200	Strong transcription	K562	blood
17	chr11:33726800-33736000	Strong transcription	HSMMtube	muscle
18	chr11:33726800-33741400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:33727000-33732200	Strong transcription	Rectal Mucosa Donor 31	rectum
20	chr11:33727000-33735000	Strong transcription	NH-A	brain
21	chr11:33727000-33738200	Strong transcription	HSMM	muscle
22	chr11:33727200-33732400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:33728200-33732200	Strong transcription	Stomach Smooth Muscle	stomach
24	chr11:33728200-33736000	Strong transcription	Fetal Thymus	thymus
25	chr11:33728200-33744000	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr11:33728400-33732200	Strong transcription	Primary hematopoietic stem cells	blood
27	chr11:33728400-33744600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr11:33728600-33732400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr11:33728600-33736000	Strong transcription	Duodenum Smooth Muscle	Duodenum
30	chr11:33728600-33738200	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr11:33728600-33745000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr11:33729200-33732200	Strong transcription	Brain Anterior Caudate	brain
33	chr11:33729200-33732400	Strong transcription	Liver	Liver
34	chr11:33729200-33737000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:33729200-33740000	Strong transcription	Fetal Muscle Leg	muscle
36	chr11:33729200-33742400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr11:33729200-33743200	Strong transcription	GM12878-XiMat	blood
38	chr11:33729600-33732800	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr11:33729600-33735400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr11:33729600-33736400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr11:33729800-33733000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr11:33729800-33736400	Strong transcription	Placenta	Placenta
43	chr11:33729800-33742400	Strong transcription	Osteobl	bone
44	chr11:33730000-33733200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr11:33730000-33734200	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr11:33730200-33732200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr11:33730200-33732200	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr11:33730200-33732200	Strong transcription	Colon Smooth Muscle	Colon
49	chr11:33730200-33732600	Strong transcription	Primary T cells from cord blood	blood
50	chr11:33730200-33733200	Strong transcription	Primary T helper cells fromperipheralblood	blood

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