Variant report

Variant	rs16924660
Chromosome Location	chr11:33742510-33742511
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:33742443-33742643	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr11:33742179-33742543	Hela-S3	cervix:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:33730057..33732913-chr11:33741218..33744001,2	MCF-7	breast:
2	chr11:33741862..33744483-chr11:33754300..33758090,5	K562	blood:
3	chr11:33735999..33748184-chr11:33752891..33760863,45	MCF-7	breast:
4	chr11:33741351..33743266-chr11:33784029..33786297,2	MCF-7	breast:
5	chr11:33278516..33280068-chr11:33740390..33742827,2	MCF-7	breast:
6	chr11:33740386..33747828-chr11:33750725..33760528,16	K562	blood:
7	chr11:33740434..33748761-chr11:33752749..33759182,20	MCF-7	breast:

No data

Variant related genes	Relation type
CD59	TF binding region
ENSG00000110422	Chromatin interaction
ENSG00000085063	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10836112	1.00[ASN][1000 genomes]
rs11825259	1.00[ASN][1000 genomes]
rs12275719	1.00[ASN][1000 genomes]
rs12280748	1.00[ASN][1000 genomes]
rs12291756	1.00[ASN][1000 genomes]
rs16924647	1.00[ASN][1000 genomes]
rs16924667	1.00[ASN][1000 genomes]
rs16924765	1.00[ASN][1000 genomes]
rs60565360	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832113	chr11:33609202-33767781	Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33723000-33746000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:33723200-33744400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:33723200-33744400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr11:33723400-33745000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:33723400-33745800	Weak transcription	Primary B cells from peripheral blood	blood
6	chr11:33723400-33746000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr11:33723400-33753400	Weak transcription	Primary B cells from cord blood	blood
8	chr11:33728200-33744000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr11:33728400-33744600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:33728600-33745000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr11:33729200-33743200	Strong transcription	GM12878-XiMat	blood
12	chr11:33732000-33743000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:33732000-33745800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:33732000-33746000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:33733400-33744200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:33733800-33744200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr11:33733800-33744600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:33734800-33744800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:33735400-33743000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr11:33735600-33742800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:33735800-33743000	Strong transcription	Brain Cingulate Gyrus	brain
22	chr11:33735800-33743000	Weak transcription	Fetal Heart	heart
23	chr11:33736000-33744000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr11:33736400-33743400	Genic enhancers	Muscle Satellite Cultured Cells	--
25	chr11:33736800-33742800	Genic enhancers	Hela-S3	cervix
26	chr11:33736800-33743600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
27	chr11:33737000-33742800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:33737000-33743200	Strong transcription	Lung	lung
29	chr11:33737000-33744000	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr11:33737000-33744000	Strong transcription	Fetal Intestine Large	intestine
31	chr11:33737000-33745000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr11:33737200-33743200	Weak transcription	Right Atrium	heart
33	chr11:33737200-33743400	Strong transcription	K562	blood
34	chr11:33737200-33743800	Strong transcription	Liver	Liver
35	chr11:33737400-33743200	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr11:33737400-33743400	Genic enhancers	Skeletal Muscle Male	skeletal muscle
37	chr11:33737400-33743800	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr11:33737400-33743800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr11:33737400-33744000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr11:33737600-33742800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr11:33737600-33743600	Weak transcription	Small Intestine	intestine
42	chr11:33737600-33744000	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr11:33737600-33747000	Genic enhancers	HMEC	breast
44	chr11:33738000-33742600	Strong transcription	Rectal Smooth Muscle	rectum
45	chr11:33738000-33743800	Strong transcription	Gastric	stomach
46	chr11:33738200-33743200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr11:33738200-33744400	Strong transcription	Fetal Intestine Small	intestine
48	chr11:33738400-33744400	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr11:33738600-33742800	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr11:33738600-33743200	Strong transcription	Duodenum Smooth Muscle	Duodenum

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