Variant report

Variant	rs16924929
Chromosome Location	chr8:60411723-60411724
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10093286	1.00[EUR][1000 genomes]
rs10103006	0.83[EUR][1000 genomes]
rs10106890	1.00[EUR][1000 genomes]
rs10504293	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16924915	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2139233	1.00[EUR][1000 genomes]
rs2222250	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28574270	1.00[EUR][1000 genomes]
rs28672242	1.00[EUR][1000 genomes]
rs28788603	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6988456	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7004505	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7004697	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7007665	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7008127	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7017277	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7822263	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9692739	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9693005	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029441	chr8:60099776-60539141	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539629	chr8:60099776-60539141	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831330	chr8:60270398-60514078	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60410600-60411800	Weak transcription	Pancreas	Pancrea
2	chr8:60411000-60412000	ZNF genes & repeats	Fetal Intestine Small	intestine
3	chr8:60411000-60412800	Enhancers	Colon Smooth Muscle	Colon
4	chr8:60411000-60413000	Enhancers	Rectal Smooth Muscle	rectum
5	chr8:60411200-60412000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:60411600-60412600	Enhancers	Fetal Intestine Large	intestine
7	chr8:60411600-60412600	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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