Variant report
| Variant | rs28672242 |
|---|---|
| Chromosome Location | chr8:60349128-60349129 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10093286 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10102694 | 0.98[ASN][1000 genomes] |
| rs10102793 | 0.98[ASN][1000 genomes] |
| rs10103006 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10106890 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10504293 | 0.83[EUR][1000 genomes] |
| rs16924877 | 0.97[ASN][1000 genomes] |
| rs16924885 | 0.97[ASN][1000 genomes] |
| rs16924887 | 0.97[ASN][1000 genomes] |
| rs16924893 | 0.97[ASN][1000 genomes] |
| rs16924915 | 1.00[EUR][1000 genomes] |
| rs16924929 | 1.00[EUR][1000 genomes] |
| rs2139233 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2222250 | 1.00[EUR][1000 genomes] |
| rs28574270 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28651207 | 0.98[ASN][1000 genomes] |
| rs28788603 | 1.00[EUR][1000 genomes] |
| rs6471787 | 0.97[ASN][1000 genomes] |
| rs6988456 | 1.00[EUR][1000 genomes] |
| rs6992861 | 0.98[ASN][1000 genomes] |
| rs7004505 | 1.00[EUR][1000 genomes] |
| rs7004697 | 1.00[EUR][1000 genomes] |
| rs7007665 | 1.00[EUR][1000 genomes] |
| rs7008127 | 1.00[EUR][1000 genomes] |
| rs7011055 | 0.98[ASN][1000 genomes] |
| rs7011263 | 0.98[ASN][1000 genomes] |
| rs7011488 | 0.98[ASN][1000 genomes] |
| rs7017277 | 1.00[EUR][1000 genomes] |
| rs7822263 | 1.00[EUR][1000 genomes] |
| rs7830772 | 0.98[ASN][1000 genomes] |
| rs7835053 | 0.98[ASN][1000 genomes] |
| rs9692739 | 1.00[EUR][1000 genomes] |
| rs9693005 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1029441 | chr8:60099776-60539141 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv539629 | chr8:60099776-60539141 | ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv831329 | chr8:60162977-60356031 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv831330 | chr8:60270398-60514078 | Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv890941 | chr8:60309850-60381595 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:60348200-60349200 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
