Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10093286	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10102694	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10102793	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10103006	0.98[ASN][1000 genomes]
rs10106890	0.98[ASN][1000 genomes]
rs1467228	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1519071	0.81[AMR][1000 genomes]
rs16924877	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16924885	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16924887	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16924893	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2139233	0.95[ASN][1000 genomes]
rs28464274	0.81[AMR][1000 genomes]
rs28574270	0.98[ASN][1000 genomes]
rs28651207	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28672242	0.98[ASN][1000 genomes]
rs6471787	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6992861	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7011055	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7011263	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7011488	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7830772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029441	chr8:60099776-60539141	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539629	chr8:60099776-60539141	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831329	chr8:60162977-60356031	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv831330	chr8:60270398-60514078	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv890941	chr8:60309850-60381595	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60335800-60337600	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr8:60336200-60336800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:60336200-60337200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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