Variant report

Variant	rs10093286
Chromosome Location	chr8:60348514-60348515
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10102694	0.98[ASN][1000 genomes]
rs10102793	0.98[ASN][1000 genomes]
rs10103006	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10106890	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504293	0.83[EUR][1000 genomes]
rs1467228	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16924877	0.97[ASN][1000 genomes]
rs16924885	0.97[ASN][1000 genomes]
rs16924887	0.97[ASN][1000 genomes]
rs16924893	0.97[ASN][1000 genomes]
rs16924915	1.00[EUR][1000 genomes]
rs16924929	1.00[EUR][1000 genomes]
rs2139233	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2222250	1.00[EUR][1000 genomes]
rs28574270	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28651207	0.98[ASN][1000 genomes]
rs28672242	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28788603	1.00[EUR][1000 genomes]
rs6471787	0.97[ASN][1000 genomes]
rs6988456	1.00[EUR][1000 genomes]
rs6992861	0.98[ASN][1000 genomes]
rs7004505	1.00[EUR][1000 genomes]
rs7004697	1.00[EUR][1000 genomes]
rs7007665	1.00[EUR][1000 genomes]
rs7008127	1.00[EUR][1000 genomes]
rs7011055	0.98[ASN][1000 genomes]
rs7011263	0.98[ASN][1000 genomes]
rs7011488	0.98[ASN][1000 genomes]
rs7017277	1.00[EUR][1000 genomes]
rs7822263	1.00[EUR][1000 genomes]
rs7830772	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7835053	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9692739	1.00[EUR][1000 genomes]
rs9693005	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029441	chr8:60099776-60539141	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539629	chr8:60099776-60539141	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831329	chr8:60162977-60356031	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv831330	chr8:60270398-60514078	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv890941	chr8:60309850-60381595	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60348200-60349200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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