Variant report

Variant	rs16924997
Chromosome Location	chr9:108636440-108636441
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10512342	0.83[EUR][1000 genomes]
rs12345407	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs35232724	0.83[EUR][1000 genomes]
rs57288965	0.83[EUR][1000 genomes]
rs57544538	0.83[EUR][1000 genomes]
rs57694909	0.83[EUR][1000 genomes]
rs58554531	0.83[EUR][1000 genomes]
rs58943241	0.83[EUR][1000 genomes]
rs59314159	0.83[EUR][1000 genomes]
rs59747314	0.83[EUR][1000 genomes]
rs6477452	0.83[EUR][1000 genomes]
rs7030040	0.83[EUR][1000 genomes]
rs7047325	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs73518117	0.83[EUR][1000 genomes]
rs73518124	0.83[EUR][1000 genomes]
rs73518141	0.83[EUR][1000 genomes]
rs73518160	0.83[EUR][1000 genomes]
rs73518170	0.83[EUR][1000 genomes]
rs73518183	0.83[EUR][1000 genomes]
rs73520071	0.83[EUR][1000 genomes]
rs73520092	0.83[EUR][1000 genomes]
rs73520094	0.83[EUR][1000 genomes]
rs73522007	0.83[EUR][1000 genomes]
rs73522022	0.83[EUR][1000 genomes]
rs73522055	0.83[EUR][1000 genomes]
rs73522056	0.83[EUR][1000 genomes]
rs73522061	0.83[EUR][1000 genomes]
rs73522067	0.83[EUR][1000 genomes]
rs7866807	0.83[EUR][1000 genomes]
rs7873482	1.00[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1041073	chr9:108535813-108731343	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1036849	chr9:108582944-108651205	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1052684	chr9:108582944-108730280	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv615140	chr9:108592589-108725567	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv831679	chr9:108603112-108785347	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108634800-108640000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr9:108635400-108639000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr9:108635800-108636600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr9:108635800-108636600	Enhancers	Brain Angular Gyrus	brain
5	chr9:108635800-108636800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:108636000-108636600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr9:108636000-108636600	Enhancers	Brain Cingulate Gyrus	brain
8	chr9:108636200-108636600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr9:108636200-108636600	Weak transcription	Fetal Brain Female	brain
10	chr9:108636200-108639800	Weak transcription	Fetal Brain Male	brain

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