Variant report

Variant	rs73518160
Chromosome Location	chr9:108489823-108489824
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12345407	1.00[EUR][1000 genomes]
rs16924820	1.00[EUR][1000 genomes]
rs16924997	0.83[EUR][1000 genomes]
rs34006675	1.00[EUR][1000 genomes]
rs35232724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57288965	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57544538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57694909	1.00[EUR][1000 genomes]
rs58554531	1.00[EUR][1000 genomes]
rs58943241	1.00[EUR][1000 genomes]
rs59271367	1.00[AMR][1000 genomes]
rs59314159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59372367	1.00[AMR][1000 genomes]
rs59747314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6477452	1.00[EUR][1000 genomes]
rs7022006	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7030040	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7047325	1.00[EUR][1000 genomes]
rs73504072	1.00[AMR][1000 genomes]
rs73504080	1.00[AMR][1000 genomes]
rs73504101	1.00[AMR][1000 genomes]
rs73504102	1.00[AMR][1000 genomes]
rs73506304	1.00[AMR][1000 genomes]
rs73506307	1.00[AMR][1000 genomes]
rs73516084	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73518117	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73518124	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73518141	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73518170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73518183	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73520071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73520092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73520094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73522007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73522022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73522055	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73522056	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73522061	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73522067	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7866807	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7870562	1.00[EUR][1000 genomes]
rs7873482	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv615116	chr9:108468129-108546438	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108457800-108492200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr9:108458000-108497800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr9:108458200-108491400	Weak transcription	HSMMtube	muscle
4	chr9:108458200-108491600	Weak transcription	Brain Anterior Caudate	brain
5	chr9:108458200-108495400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr9:108458200-108497000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:108463200-108496800	Weak transcription	HepG2	liver
8	chr9:108465000-108496600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr9:108470600-108497000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr9:108470800-108496000	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr9:108471000-108495400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr9:108473200-108490800	Weak transcription	Fetal Lung	lung
13	chr9:108473200-108496400	Weak transcription	Primary T cells from cord blood	blood
14	chr9:108473200-108497200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr9:108473200-108499800	Weak transcription	Gastric	stomach
16	chr9:108473400-108492200	Weak transcription	GM12878-XiMat	blood
17	chr9:108475400-108492600	Weak transcription	Fetal Muscle Leg	muscle
18	chr9:108476200-108497800	Weak transcription	Psoas Muscle	Psoas
19	chr9:108476400-108491400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr9:108476400-108498200	Weak transcription	Left Ventricle	heart
21	chr9:108476600-108493800	Weak transcription	Ovary	ovary
22	chr9:108476800-108491400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:108477200-108493400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr9:108477200-108495400	Weak transcription	Primary B cells from peripheral blood	blood
25	chr9:108479000-108490000	Weak transcription	Fetal Heart	heart
26	chr9:108481600-108497600	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr9:108482200-108496600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr9:108483800-108490000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:108484200-108497200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr9:108484800-108497600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr9:108485200-108493800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr9:108486200-108492800	Weak transcription	Fetal Intestine Large	intestine
33	chr9:108486400-108490600	Weak transcription	Right Ventricle	heart
34	chr9:108487200-108490200	Strong transcription	Skeletal Muscle Female	skeletal muscle
35	chr9:108488000-108491800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr9:108488000-108497000	Weak transcription	Liver	Liver
37	chr9:108488000-108497000	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr9:108488000-108497200	Weak transcription	K562	blood
39	chr9:108489000-108490000	Strong transcription	Primary hematopoietic stem cells	blood
40	chr9:108489200-108490200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr9:108489200-108490400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr9:108489200-108490400	Strong transcription	Primary B cells from cord blood	blood
43	chr9:108489400-108490400	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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