Variant report

Variant	rs73504072
Chromosome Location	chr9:108593763-108593764
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs35232724	1.00[AMR][1000 genomes]
rs57544538	1.00[AMR][1000 genomes]
rs58257574	1.00[AFR][1000 genomes]
rs59271367	1.00[AMR][1000 genomes]
rs59314159	1.00[AMR][1000 genomes]
rs59372367	1.00[AMR][1000 genomes]
rs59747314	1.00[AMR][1000 genomes]
rs7022006	1.00[AMR][1000 genomes]
rs73504080	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504093	0.95[AFR][1000 genomes]
rs73504101	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504102	1.00[AMR][1000 genomes]
rs73506304	1.00[AMR][1000 genomes]
rs73506307	1.00[AMR][1000 genomes]
rs73518141	1.00[AMR][1000 genomes]
rs73518160	1.00[AMR][1000 genomes]
rs73518170	1.00[AMR][1000 genomes]
rs73518183	1.00[AMR][1000 genomes]
rs73520071	1.00[AMR][1000 genomes]
rs73520092	1.00[AMR][1000 genomes]
rs73520094	1.00[AMR][1000 genomes]
rs73522007	1.00[AMR][1000 genomes]
rs73522022	1.00[AMR][1000 genomes]
rs73522055	1.00[AMR][1000 genomes]
rs73522056	1.00[AMR][1000 genomes]
rs73522061	1.00[AMR][1000 genomes]
rs73522067	1.00[AMR][1000 genomes]
rs7866807	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1041073	chr9:108535813-108731343	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv508558	chr9:108536115-108611087	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	n/a
5	nsv1036849	chr9:108582944-108651205	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1052684	chr9:108582944-108730280	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv615140	chr9:108592589-108725567	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108591400-108594800	Weak transcription	HMEC	breast

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