Variant report

Variant	rs73504080
Chromosome Location	chr9:108599257-108599258
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108590422..108592355-chr9:108598163..108600744,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs35232724	1.00[AMR][1000 genomes]
rs57544538	1.00[AMR][1000 genomes]
rs58257574	0.97[AFR][1000 genomes]
rs59271367	1.00[AMR][1000 genomes]
rs59314159	1.00[AMR][1000 genomes]
rs59372367	1.00[AMR][1000 genomes]
rs59747314	1.00[AMR][1000 genomes]
rs7022006	1.00[AMR][1000 genomes]
rs73504072	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504093	0.97[AFR][1000 genomes]
rs73504101	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504102	1.00[AMR][1000 genomes]
rs73506304	1.00[AMR][1000 genomes]
rs73506307	1.00[AMR][1000 genomes]
rs73518141	1.00[AMR][1000 genomes]
rs73518160	1.00[AMR][1000 genomes]
rs73518170	1.00[AMR][1000 genomes]
rs73518183	1.00[AMR][1000 genomes]
rs73520071	1.00[AMR][1000 genomes]
rs73520092	1.00[AMR][1000 genomes]
rs73520094	1.00[AMR][1000 genomes]
rs73522007	1.00[AMR][1000 genomes]
rs73522022	1.00[AMR][1000 genomes]
rs73522055	1.00[AMR][1000 genomes]
rs73522056	1.00[AMR][1000 genomes]
rs73522061	1.00[AMR][1000 genomes]
rs73522067	1.00[AMR][1000 genomes]
rs7866807	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1041073	chr9:108535813-108731343	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv508558	chr9:108536115-108611087	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	n/a
5	nsv1036849	chr9:108582944-108651205	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1052684	chr9:108582944-108730280	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv615140	chr9:108592589-108725567	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108596400-108599400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:108596600-108600000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr9:108597400-108600000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:108597400-108600000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:108597800-108599800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr9:108597800-108600400	Enhancers	Ovary	ovary
7	chr9:108598000-108599800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr9:108598000-108600000	Enhancers	Fetal Lung	lung
9	chr9:108598000-108600000	Enhancers	Fetal Stomach	stomach
10	chr9:108598000-108600200	Enhancers	Fetal Muscle Leg	muscle
11	chr9:108598200-108599600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:108598400-108599400	Weak transcription	Psoas Muscle	Psoas
13	chr9:108598400-108599600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:108598400-108600000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr9:108598400-108615600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr9:108598600-108599400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr9:108598800-108600000	Enhancers	Fetal Kidney	kidney
18	chr9:108598800-108600000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr9:108599200-108600000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:108599200-108600000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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