Variant report

Variant	rs73504101
Chromosome Location	chr9:108616366-108616367
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108612291..108614169-chr9:108614702..108617430,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228948	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs35232724	1.00[AMR][1000 genomes]
rs57544538	1.00[AMR][1000 genomes]
rs58257574	0.82[AFR][1000 genomes]
rs59271367	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59314159	1.00[AMR][1000 genomes]
rs59372367	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59747314	1.00[AMR][1000 genomes]
rs7022006	1.00[AMR][1000 genomes]
rs7048725	0.90[AFR][1000 genomes]
rs73504072	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504080	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504093	0.87[AFR][1000 genomes]
rs73504097	0.90[AFR][1000 genomes]
rs73504099	0.90[AFR][1000 genomes]
rs73504102	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506304	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506307	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506308	0.87[AFR][1000 genomes]
rs73506315	0.83[AFR][1000 genomes]
rs73506318	0.83[AFR][1000 genomes]
rs73518141	1.00[AMR][1000 genomes]
rs73518160	1.00[AMR][1000 genomes]
rs73518170	1.00[AMR][1000 genomes]
rs73518183	1.00[AMR][1000 genomes]
rs73520071	1.00[AMR][1000 genomes]
rs73520092	1.00[AMR][1000 genomes]
rs73520094	1.00[AMR][1000 genomes]
rs73522007	1.00[AMR][1000 genomes]
rs73522022	1.00[AMR][1000 genomes]
rs73522055	1.00[AMR][1000 genomes]
rs73522056	1.00[AMR][1000 genomes]
rs73522061	1.00[AMR][1000 genomes]
rs73522067	1.00[AMR][1000 genomes]
rs7866807	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1041073	chr9:108535813-108731343	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1036849	chr9:108582944-108651205	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1052684	chr9:108582944-108730280	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv615140	chr9:108592589-108725567	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv831679	chr9:108603112-108785347	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108613800-108619200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr9:108616000-108616400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:108616000-108616800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:108616000-108618800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:108616200-108616400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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