Variant report

Variant	rs7022006
Chromosome Location	chr9:108545544-108545545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108207677..108209988-chr9:108545420..108547936,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs35232724	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57288965	0.96[AFR][1000 genomes]
rs57544538	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59271367	1.00[AMR][1000 genomes]
rs59314159	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59372367	1.00[AMR][1000 genomes]
rs59747314	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7030040	0.96[AFR][1000 genomes]
rs73504072	1.00[AMR][1000 genomes]
rs73504080	1.00[AMR][1000 genomes]
rs73504101	1.00[AMR][1000 genomes]
rs73504102	1.00[AMR][1000 genomes]
rs73506304	1.00[AMR][1000 genomes]
rs73506307	1.00[AMR][1000 genomes]
rs73516084	0.84[AFR][1000 genomes]
rs73518117	0.96[AFR][1000 genomes]
rs73518124	0.96[AFR][1000 genomes]
rs73518141	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73518160	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73518170	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73518183	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73520071	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73520092	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73520094	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73522007	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73522022	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73522055	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73522056	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73522061	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73522067	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7866807	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv615116	chr9:108468129-108546438	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv1798719	chr9:108535272-108546438	Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	n/a
5	nsv1041073	chr9:108535813-108731343	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv508558	chr9:108536115-108611087	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	n/a
7	nsv615133	chr9:108536511-108546438	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv615134	chr9:108536564-108546438	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv1846655	chr9:108536712-108569642	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv615139	chr9:108536928-108546438	Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108515200-108560600	Weak transcription	Ovary	ovary
2	chr9:108520600-108546400	Weak transcription	Fetal Intestine Small	intestine
3	chr9:108530400-108552600	Weak transcription	Pancreas	Pancrea
4	chr9:108539200-108547000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr9:108539200-108548400	Weak transcription	Primary B cells from cord blood	blood
6	chr9:108539200-108552200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr9:108544800-108545600	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr9:108544800-108546000	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr9:108545000-108545600	Active TSS	K562	blood
10	chr9:108545000-108545800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
11	chr9:108545000-108545800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr9:108545000-108546000	Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr9:108545200-108545600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
14	chr9:108545200-108545600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr9:108545200-108546000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr9:108545400-108545800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr9:108545400-108545800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell

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