Variant report

Variant	rs73516084
Chromosome Location	chr9:108446172-108446173
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:108438804..108448538-chr9:108453257..108460732,10	K562	blood:
2	chr9:108418532..108421730-chr9:108444184..108446656,3	K562	blood:
3	chr9:108442166..108445197-chr9:108445309..108448019,3	MCF-7	breast:
4	chr9:108443536..108446444-chr9:108448478..108450783,3	K562	blood:
5	chr9:108441575..108443928-chr9:108443959..108447261,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095209	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12345407	0.83[EUR][1000 genomes]
rs16924820	0.83[EUR][1000 genomes]
rs34006675	0.83[EUR][1000 genomes]
rs35232724	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs57288965	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs57544538	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs57694909	0.83[EUR][1000 genomes]
rs58554531	0.83[EUR][1000 genomes]
rs58943241	0.83[EUR][1000 genomes]
rs59314159	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs59747314	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6477452	0.83[EUR][1000 genomes]
rs7022006	0.84[AFR][1000 genomes]
rs7030040	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7047325	0.83[EUR][1000 genomes]
rs73518117	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73518124	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73518141	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73518160	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73518170	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73518183	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73520071	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73520092	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73520094	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73522007	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73522022	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73522055	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73522056	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73522061	0.83[EUR][1000 genomes]
rs73522067	0.83[EUR][1000 genomes]
rs7866807	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7870562	0.83[EUR][1000 genomes]
rs7873482	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519023	chr9:108371549-108454745	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	n/a
2	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108423600-108451600	Weak transcription	Psoas Muscle	Psoas
2	chr9:108442000-108450600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr9:108445200-108446400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:108445600-108446600	Enhancers	Fetal Muscle Leg	muscle
5	chr9:108445600-108446600	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr9:108445800-108446400	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links