Variant report

Variant	rs16924820
Chromosome Location	chr9:108429486-108429487
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12345407	1.00[EUR][1000 genomes]
rs34006675	1.00[EUR][1000 genomes]
rs35232724	1.00[EUR][1000 genomes]
rs57288965	1.00[EUR][1000 genomes]
rs57544538	1.00[EUR][1000 genomes]
rs57694909	1.00[EUR][1000 genomes]
rs58554531	1.00[EUR][1000 genomes]
rs58943241	1.00[EUR][1000 genomes]
rs59314159	1.00[EUR][1000 genomes]
rs59747314	1.00[EUR][1000 genomes]
rs6477452	1.00[EUR][1000 genomes]
rs7030040	1.00[EUR][1000 genomes]
rs7047325	1.00[EUR][1000 genomes]
rs73516084	0.83[EUR][1000 genomes]
rs73518117	1.00[EUR][1000 genomes]
rs73518124	1.00[EUR][1000 genomes]
rs73518141	1.00[EUR][1000 genomes]
rs73518160	1.00[EUR][1000 genomes]
rs73518170	1.00[EUR][1000 genomes]
rs73518183	1.00[EUR][1000 genomes]
rs73520071	1.00[EUR][1000 genomes]
rs73520092	1.00[EUR][1000 genomes]
rs73520094	1.00[EUR][1000 genomes]
rs73522007	1.00[EUR][1000 genomes]
rs73522022	1.00[EUR][1000 genomes]
rs73522055	1.00[EUR][1000 genomes]
rs73522056	1.00[EUR][1000 genomes]
rs73522061	1.00[EUR][1000 genomes]
rs73522067	1.00[EUR][1000 genomes]
rs7866807	1.00[EUR][1000 genomes]
rs7870562	1.00[EUR][1000 genomes]
rs7873482	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519023	chr9:108371549-108454745	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	n/a
2	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108419800-108432800	Weak transcription	Brain Germinal Matrix	brain
2	chr9:108423600-108451600	Weak transcription	Psoas Muscle	Psoas
3	chr9:108425400-108433000	Weak transcription	GM12878-XiMat	blood
4	chr9:108427200-108430200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:108427600-108431800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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