Variant report

Variant	rs7873482
Chromosome Location	chr9:108447416-108447417
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12345407	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16924820	1.00[EUR][1000 genomes]
rs16924997	0.83[EUR][1000 genomes]
rs34006675	1.00[EUR][1000 genomes]
rs35232724	1.00[EUR][1000 genomes]
rs57288965	1.00[EUR][1000 genomes]
rs57544538	1.00[EUR][1000 genomes]
rs57694909	1.00[EUR][1000 genomes]
rs58554531	1.00[EUR][1000 genomes]
rs58943241	1.00[EUR][1000 genomes]
rs59314159	1.00[EUR][1000 genomes]
rs59747314	1.00[EUR][1000 genomes]
rs6477452	1.00[EUR][1000 genomes]
rs7030040	1.00[EUR][1000 genomes]
rs7047325	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs73516084	0.83[EUR][1000 genomes]
rs73518117	1.00[EUR][1000 genomes]
rs73518124	1.00[EUR][1000 genomes]
rs73518141	1.00[EUR][1000 genomes]
rs73518160	1.00[EUR][1000 genomes]
rs73518170	1.00[EUR][1000 genomes]
rs73518183	1.00[EUR][1000 genomes]
rs73520071	1.00[EUR][1000 genomes]
rs73520092	1.00[EUR][1000 genomes]
rs73520094	1.00[EUR][1000 genomes]
rs73522007	1.00[EUR][1000 genomes]
rs73522022	1.00[EUR][1000 genomes]
rs73522055	1.00[EUR][1000 genomes]
rs73522056	1.00[EUR][1000 genomes]
rs73522061	1.00[EUR][1000 genomes]
rs73522067	1.00[EUR][1000 genomes]
rs7866807	1.00[EUR][1000 genomes]
rs7870562	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519023	chr9:108371549-108454745	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	n/a
2	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108423600-108451600	Weak transcription	Psoas Muscle	Psoas
2	chr9:108442000-108450600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr9:108446600-108447600	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:108446600-108450400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr9:108447000-108447800	Weak transcription	HSMMtube	muscle
6	chr9:108447000-108448400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr9:108447200-108448000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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