Variant report

Variant	rs16925117
Chromosome Location	chr11:34096121-34096122
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34095947..34097764-chr11:34100722..34102411,2	K562	blood:
2	chr11:34079591..34082154-chr11:34095568..34097319,2	MCF-7	breast:
3	chr11:34094865..34097334-chr11:34103364..34106119,3	K562	blood:
4	chr11:34018779..34021162-chr11:34095181..34097010,2	K562	blood:
5	chr11:34070782..34075925-chr11:34090363..34101891,14	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135387	Chromatin interaction

rs_ID	r²[population]
rs10501132	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10501133	0.93[YRI][hapmap]
rs16925123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16925219	1.00[YRI][hapmap]
rs17699090	0.87[AFR][1000 genomes]
rs17699505	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs17699517	0.85[YRI][hapmap]
rs17699883	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs17700132	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs17700360	0.85[YRI][hapmap]
rs17700714	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs17700877	1.00[YRI][hapmap]
rs17701015	0.93[YRI][hapmap]
rs17777885	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs17778417	0.87[YRI][hapmap]
rs17778759	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs2421459	0.91[YRI][hapmap]
rs2982596	1.00[AMR][1000 genomes]
rs59359577	0.87[AFR][1000 genomes]
rs59972955	0.87[AFR][1000 genomes]
rs7925627	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7933297	0.93[YRI][hapmap]
rs7938575	1.00[AMR][1000 genomes]

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34075400-34103800	Weak transcription	Aorta	Aorta
2	chr11:34075600-34100200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:34077000-34100600	Weak transcription	Esophagus	oesophagus
4	chr11:34079000-34126600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:34083400-34126600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:34083600-34124800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:34088600-34110800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr11:34088600-34124600	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:34088800-34124000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr11:34089600-34104000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr11:34089800-34096200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:34090000-34096200	Weak transcription	Spleen	Spleen
13	chr11:34090000-34096400	Weak transcription	Small Intestine	intestine
14	chr11:34090000-34097800	Weak transcription	Pancreas	Pancrea
15	chr11:34090000-34100400	Weak transcription	Psoas Muscle	Psoas
16	chr11:34090000-34100600	Weak transcription	Right Ventricle	heart
17	chr11:34090400-34096800	Weak transcription	Brain Angular Gyrus	brain
18	chr11:34090400-34102000	Weak transcription	Fetal Heart	heart
19	chr11:34091000-34123400	Strong transcription	Fetal Muscle Trunk	muscle
20	chr11:34091000-34123400	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr11:34091200-34123600	Strong transcription	Dnd41	blood
22	chr11:34091600-34123800	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr11:34091600-34124200	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr11:34091800-34096600	Strong transcription	Fetal Intestine Small	intestine
25	chr11:34091800-34096800	Strong transcription	Fetal Stomach	stomach
26	chr11:34091800-34102600	Strong transcription	K562	blood
27	chr11:34091800-34123400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
28	chr11:34091800-34124200	Strong transcription	Fetal Thymus	thymus
29	chr11:34091800-34124600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr11:34091800-34124800	Strong transcription	Fetal Intestine Large	intestine
31	chr11:34092000-34119800	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr11:34092200-34098800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr11:34092600-34102400	Strong transcription	Fetal Kidney	kidney
34	chr11:34092600-34106600	Strong transcription	Primary hematopoietic stem cells	blood
35	chr11:34092600-34110600	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr11:34092600-34122200	Strong transcription	Fetal Brain Female	brain
37	chr11:34092600-34123000	Strong transcription	GM12878-XiMat	blood
38	chr11:34092600-34123400	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr11:34092600-34124800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr11:34092600-34125000	Strong transcription	Liver	Liver
41	chr11:34092800-34096200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr11:34093000-34096600	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:34093000-34099200	Strong transcription	H9 Cell Line	embryonic stem cell
44	chr11:34093000-34110600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr11:34093000-34122400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr11:34093200-34096400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr11:34093200-34096600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr11:34093200-34096600	Strong transcription	Brain Anterior Caudate	brain
49	chr11:34093200-34096800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr11:34093200-34096800	Strong transcription	Adipose Nuclei	Adipose

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