Variant report

Variant	rs2421459
Chromosome Location	chr11:34036274-34036275
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34030524..34032316-chr11:34034939..34037311,2	K562	blood:
2	chr11:34035462..34037651-chr11:34072261..34075519,3	MCF-7	breast:
3	chr11:34034770..34037468-chr11:34039227..34043308,3	K562	blood:
4	chr11:34035968..34037772-chr11:34038826..34040727,2	K562	blood:

Variant related genes	Relation type
ENSG00000135387	Chromatin interaction

Extended variants
information (count: 101 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10047428	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs10047487	0.80[EUR][1000 genomes]
rs10501132	0.89[CEU][hapmap];0.91[YRI][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10501133	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs10836150	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11601630	0.84[GIH][hapmap]
rs16925114	0.89[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16925115	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16925117	0.91[YRI][hapmap]
rs16925121	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16925126	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16925134	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16925147	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16925153	0.89[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.80[EUR][1000 genomes]
rs16925155	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16925160	0.89[CEU][hapmap]
rs16925163	0.89[CEU][hapmap]
rs16925167	0.89[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs16925170	0.89[CEU][hapmap];0.91[GIH][hapmap];0.83[TSI][hapmap]
rs16925173	0.89[CEU][hapmap]
rs16925175	0.89[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs16925177	0.89[CEU][hapmap]
rs16925181	0.89[CEU][hapmap]
rs16925182	0.89[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs16925183	0.89[CEU][hapmap];0.84[GIH][hapmap];0.83[TSI][hapmap]
rs16925184	0.89[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs16925219	0.89[CEU][hapmap];0.91[YRI][hapmap]
rs16926099	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17367679	0.89[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs17699090	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17699505	0.89[CEU][hapmap];0.91[YRI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17699517	0.87[ASW][hapmap];0.89[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17699883	0.85[CEU][hapmap];0.91[YRI][hapmap]
rs17700132	0.87[ASW][hapmap];0.89[CEU][hapmap];0.84[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.91[YRI][hapmap]
rs17700360	0.87[ASW][hapmap];0.89[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs17700714	1.00[ASW][hapmap];0.89[CEU][hapmap];0.91[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.91[YRI][hapmap]
rs17700877	0.89[CEU][hapmap];0.90[YRI][hapmap]
rs17701015	0.89[CEU][hapmap];0.84[YRI][hapmap]
rs17771070	0.80[CEU][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap]
rs17771981	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17777885	0.89[CEU][hapmap];0.88[YRI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17777985	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs17778417	0.89[CEU][hapmap]
rs17778759	1.00[ASW][hapmap];0.89[CEU][hapmap];0.91[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.91[YRI][hapmap]
rs1883958	0.89[CEU][hapmap]
rs2004272	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2421456	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2421457	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2467392	0.89[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs2467393	0.89[CEU][hapmap]
rs2473929	0.89[CEU][hapmap];0.84[GIH][hapmap];0.83[TSI][hapmap]
rs2473932	0.89[CEU][hapmap]
rs28768368	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2957481	0.89[CEU][hapmap]
rs2957509	0.89[CEU][hapmap];0.91[GIH][hapmap];0.83[TSI][hapmap]
rs2957514	0.89[CEU][hapmap];0.91[GIH][hapmap];0.83[TSI][hapmap]
rs2957518	0.90[GIH][hapmap]
rs2982587	0.89[CEU][hapmap];0.91[GIH][hapmap];0.83[TSI][hapmap]
rs2982617	0.89[CEU][hapmap]
rs2982619	0.89[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs36117528	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4074368	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4237663	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs4587708	0.89[CEU][hapmap];0.91[GIH][hapmap];0.83[TSI][hapmap];0.80[EUR][1000 genomes]
rs4755359	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs4756095	0.89[CEU][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs4756096	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4756101	0.85[EUR][1000 genomes]
rs4756109	0.80[CEU][hapmap]
rs56696374	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56973150	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57330513	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57636521	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59249605	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59650719	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59972955	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59978955	0.82[EUR][1000 genomes]
rs60700110	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61171154	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6484694	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7104352	0.80[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7112219	0.93[EUR][1000 genomes]
rs7112450	0.93[EUR][1000 genomes]
rs7122992	0.89[CEU][hapmap];0.93[EUR][1000 genomes]
rs7127581	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73497030	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73497035	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73497050	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73497064	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73501009	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73501017	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73501018	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73501023	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7483997	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7925527	0.89[CEU][hapmap]
rs7933297	0.89[CEU][hapmap];0.84[YRI][hapmap]
rs7940096	0.91[EUR][1000 genomes]
rs7944654	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs7951527	0.88[CEU][hapmap]
rs8191	0.89[CEU][hapmap]
rs958332	0.80[CEU][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2421459	ABTB2	cis	parietal	SCAN
rs2421459	NAT10	cis	parietal	SCAN
rs2421459	NAT10	cis	cerebellum	SCAN
rs2421459	NBAS	trans	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34035000-34036800	Enhancers	Fetal Intestine Large	intestine
2	chr11:34035200-34036800	Enhancers	Fetal Intestine Small	intestine
3	chr11:34035600-34036400	Enhancers	HepG2	liver
4	chr11:34036000-34036400	Enhancers	Duodenum Mucosa	Duodenum

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