Variant report

Variant	rs56973150
Chromosome Location	chr11:34099630-34099631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:34097970..34100025-chr11:34112115..34113840,2	K562	blood:
2	chr11:34098911..34101667-chr11:34106507..34109187,2	MCF-7	breast:
3	chr11:34082260..34086338-chr11:34099518..34101864,3	K562	blood:
4	chr11:34087929..34091218-chr11:34097690..34100394,3	K562	blood:
5	chr11:34098062..34100164-chr11:34104857..34106360,2	MCF-7	breast:
6	chr11:34098996..34101747-chr11:34104058..34106332,2	K562	blood:
7	chr11:34098778..34102740-chr11:34126291..34130100,5	K562	blood:
8	chr11:34091898..34094215-chr11:34097779..34099653,2	MCF-7	breast:
9	chr11:34070782..34075925-chr11:34090363..34101891,14	MCF-7	breast:
10	chr11:34011318..34012869-chr11:34099433..34102017,2	K562	blood:
11	chr11:34098869..34100659-chr11:34172311..34174977,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000135372	Chromatin interaction
ENSG00000135387	Chromatin interaction

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10047428	0.98[EUR][1000 genomes]
rs10047487	0.98[EUR][1000 genomes]
rs10501132	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10501133	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10836150	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11032506	0.84[AFR][1000 genomes]
rs11032507	0.84[AFR][1000 genomes]
rs11552143	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12418005	0.84[AFR][1000 genomes]
rs12419629	0.84[AFR][1000 genomes]
rs16925114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925153	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16925155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925160	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925163	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925167	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925170	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925173	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925175	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925177	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925181	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925182	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925184	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925219	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16926099	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17367679	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17699090	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17699505	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17699517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17699883	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17700132	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17700360	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17700714	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17700877	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17701015	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17771981	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17777885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17777985	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17778417	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17778759	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1883958	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2004272	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2421456	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2421457	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2421459	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2467392	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2467393	0.84[EUR][1000 genomes]
rs2473929	0.84[EUR][1000 genomes]
rs2473932	0.82[EUR][1000 genomes]
rs28768368	0.84[AMR][1000 genomes]
rs2957481	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2957509	0.89[EUR][1000 genomes]
rs2957514	0.84[EUR][1000 genomes]
rs2982587	0.87[EUR][1000 genomes]
rs2982617	0.82[EUR][1000 genomes]
rs2982619	0.84[EUR][1000 genomes]
rs36117528	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4074368	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4237663	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4587708	0.98[EUR][1000 genomes]
rs4755357	0.95[EUR][1000 genomes]
rs4755358	0.83[EUR][1000 genomes]
rs4755359	0.98[EUR][1000 genomes]
rs4756096	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4756101	0.93[EUR][1000 genomes]
rs56693007	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56696374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57330513	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57492451	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57636521	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58696677	0.91[AFR][1000 genomes]
rs58755000	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59158919	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59249605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59359577	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59518134	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59650719	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59972955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59978955	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60015864	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60494596	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60549862	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60700110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61171154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6484694	0.95[EUR][1000 genomes]
rs7102797	0.84[AFR][1000 genomes]
rs7104352	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7117217	0.84[AFR][1000 genomes]
rs7117410	0.84[AFR][1000 genomes]
rs7125948	0.84[AFR][1000 genomes]
rs7127581	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73486549	0.84[AFR][1000 genomes]
rs73486551	0.84[AFR][1000 genomes]
rs73497017	0.84[AFR][1000 genomes]
rs73497030	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73497035	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73497050	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73497064	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73500434	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73501009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73501017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73501018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73501023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73501037	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73501038	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73501048	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73501059	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73501064	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73501065	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73501069	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73501097	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7483997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7925202	0.84[AFR][1000 genomes]
rs7925527	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7933297	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7944654	0.98[EUR][1000 genomes]
rs8191	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs958332	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34075400-34103800	Weak transcription	Aorta	Aorta
2	chr11:34075600-34100200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:34077000-34100600	Weak transcription	Esophagus	oesophagus
4	chr11:34079000-34126600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:34083400-34126600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:34083600-34124800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:34088600-34110800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr11:34088600-34124600	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:34088800-34124000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr11:34089600-34104000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr11:34090000-34100400	Weak transcription	Psoas Muscle	Psoas
12	chr11:34090000-34100600	Weak transcription	Right Ventricle	heart
13	chr11:34090400-34102000	Weak transcription	Fetal Heart	heart
14	chr11:34091000-34123400	Strong transcription	Fetal Muscle Trunk	muscle
15	chr11:34091000-34123400	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr11:34091200-34123600	Strong transcription	Dnd41	blood
17	chr11:34091600-34123800	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr11:34091600-34124200	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr11:34091800-34102600	Strong transcription	K562	blood
20	chr11:34091800-34123400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr11:34091800-34124200	Strong transcription	Fetal Thymus	thymus
22	chr11:34091800-34124600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr11:34091800-34124800	Strong transcription	Fetal Intestine Large	intestine
24	chr11:34092000-34119800	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr11:34092600-34102400	Strong transcription	Fetal Kidney	kidney
26	chr11:34092600-34106600	Strong transcription	Primary hematopoietic stem cells	blood
27	chr11:34092600-34110600	Strong transcription	Cortex derived primary cultured neurospheres	brain
28	chr11:34092600-34122200	Strong transcription	Fetal Brain Female	brain
29	chr11:34092600-34123000	Strong transcription	GM12878-XiMat	blood
30	chr11:34092600-34123400	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr11:34092600-34124800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:34092600-34125000	Strong transcription	Liver	Liver
33	chr11:34093000-34110600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:34093000-34122400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr11:34093200-34107000	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr11:34093200-34122400	Strong transcription	Primary B cells from peripheral blood	blood
37	chr11:34093200-34123200	Strong transcription	H1 Cell Line	embryonic stem cell
38	chr11:34093200-34123400	Strong transcription	Placenta	Placenta
39	chr11:34093400-34102400	Strong transcription	Primary B cells from cord blood	blood
40	chr11:34093400-34107600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr11:34093400-34122400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr11:34093400-34123000	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr11:34093400-34124000	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr11:34093600-34104000	Strong transcription	HepG2	liver
45	chr11:34093600-34116600	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr11:34093600-34125000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr11:34094000-34102800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
48	chr11:34094000-34124000	Strong transcription	Fetal Lung	lung
49	chr11:34094800-34104200	Strong transcription	A549	lung
50	chr11:34095000-34119600	Strong transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links