Variant report

Variant	rs4756101
Chromosome Location	chr11:34076679-34076680
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:11)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:11 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:34076627-34077216	PFSK-1	brain:	n/a	n/a
2	POLR2A	chr11:34076545-34076922	GM12878	blood:	n/a	n/a
3	POLR2A	chr11:34076601-34076701	K562	blood:	n/a	n/a
4	POLR2A	chr11:34076614-34076779	K562	blood:	n/a	n/a
5	POLR2A	chr11:34076512-34077510	SK-N-MC	brain:	n/a	n/a
6	POLR2A	chr11:34076672-34076939	H1-hESC	embryonic stem cell:	n/a	n/a
7	POLR2A	chr11:34076593-34076859	GM12892	blood:	n/a	n/a
8	HEY1	chr11:34076619-34076976	K562	blood:	n/a	n/a
9	POLR2A	chr11:34076673-34077042	K562	blood:	n/a	n/a
10	POLR2A	chr11:34076617-34076710	HepG2	liver:	n/a	n/a
11	POLR2A	chr11:34076396-34079153	K562	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:34072006..34079358-chr11:34124269..34129390,19	K562	blood:
2	chr11:34068673..34076707-chr11:34122442..34129826,21	K562	blood:
3	chr11:34070943..34077471-chr11:34125498..34130034,9	MCF-7	breast:
4	chr11:34071981..34076766-chr11:34377622..34383038,7	MCF-7	breast:

No data

Variant related genes	Relation type
CAPRIN1	TF binding region
ENSG00000135372	Chromatin interaction
ENSG00000166016	Chromatin interaction

rs_ID	r²[population]
rs10047428	0.95[EUR][1000 genomes]
rs10047487	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10501132	0.96[EUR][1000 genomes]
rs10836150	0.87[EUR][1000 genomes]
rs11552143	0.82[EUR][1000 genomes]
rs16925114	0.96[EUR][1000 genomes]
rs16925115	0.96[EUR][1000 genomes]
rs16925121	0.93[EUR][1000 genomes]
rs16925126	0.93[EUR][1000 genomes]
rs16925134	0.93[EUR][1000 genomes]
rs16925147	0.93[EUR][1000 genomes]
rs16925153	0.95[EUR][1000 genomes]
rs16925155	0.93[EUR][1000 genomes]
rs16925160	0.82[EUR][1000 genomes]
rs16925163	0.82[EUR][1000 genomes]
rs16925167	0.82[EUR][1000 genomes]
rs16925170	0.82[EUR][1000 genomes]
rs16925173	0.82[EUR][1000 genomes]
rs16925175	0.82[EUR][1000 genomes]
rs16925177	0.82[EUR][1000 genomes]
rs16925181	0.82[EUR][1000 genomes]
rs16925182	0.82[EUR][1000 genomes]
rs16925184	0.82[EUR][1000 genomes]
rs16926099	0.96[EUR][1000 genomes]
rs17367679	0.84[EUR][1000 genomes]
rs17699090	0.96[EUR][1000 genomes]
rs17699505	0.93[EUR][1000 genomes]
rs17699517	0.93[EUR][1000 genomes]
rs17699883	0.82[EUR][1000 genomes]
rs17700132	0.82[EUR][1000 genomes]
rs17700360	0.82[EUR][1000 genomes]
rs17700714	0.82[EUR][1000 genomes]
rs17771981	0.96[EUR][1000 genomes]
rs17777885	0.93[EUR][1000 genomes]
rs17777985	0.93[EUR][1000 genomes]
rs17778417	0.82[EUR][1000 genomes]
rs17778759	0.82[EUR][1000 genomes]
rs1883958	0.82[EUR][1000 genomes]
rs2004272	0.96[EUR][1000 genomes]
rs2421456	0.96[EUR][1000 genomes]
rs2421457	0.96[EUR][1000 genomes]
rs2421459	0.85[EUR][1000 genomes]
rs2467392	0.81[EUR][1000 genomes]
rs2467393	0.81[EUR][1000 genomes]
rs2473929	0.81[EUR][1000 genomes]
rs28768368	0.82[EUR][1000 genomes]
rs2957481	0.82[EUR][1000 genomes]
rs2957509	0.82[EUR][1000 genomes]
rs2957514	0.81[EUR][1000 genomes]
rs2982587	0.84[EUR][1000 genomes]
rs2982619	0.81[EUR][1000 genomes]
rs36117528	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4074368	0.96[EUR][1000 genomes]
rs4237663	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4587708	0.95[EUR][1000 genomes]
rs4755357	0.91[EUR][1000 genomes]
rs4755358	0.90[AFR][1000 genomes]
rs4755359	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4756095	0.82[EUR][1000 genomes]
rs4756096	0.86[EUR][1000 genomes]
rs56693007	0.82[EUR][1000 genomes]
rs56696374	0.93[EUR][1000 genomes]
rs56973150	0.93[EUR][1000 genomes]
rs57330513	0.93[EUR][1000 genomes]
rs57492451	0.82[EUR][1000 genomes]
rs57636521	0.95[EUR][1000 genomes]
rs58755000	0.82[EUR][1000 genomes]
rs59158919	0.82[EUR][1000 genomes]
rs59249605	0.93[EUR][1000 genomes]
rs59518134	0.82[EUR][1000 genomes]
rs59650719	0.93[EUR][1000 genomes]
rs59972955	0.93[EUR][1000 genomes]
rs59978955	0.93[EUR][1000 genomes]
rs60015864	0.82[EUR][1000 genomes]
rs60494596	0.82[EUR][1000 genomes]
rs60700110	0.93[EUR][1000 genomes]
rs61171154	0.93[EUR][1000 genomes]
rs6484694	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7104352	0.95[EUR][1000 genomes]
rs7112219	0.82[EUR][1000 genomes]
rs7112450	0.82[EUR][1000 genomes]
rs7122992	0.82[EUR][1000 genomes]
rs7127581	0.96[EUR][1000 genomes]
rs73497030	0.98[EUR][1000 genomes]
rs73497035	0.95[EUR][1000 genomes]
rs73497050	0.96[EUR][1000 genomes]
rs73497064	0.96[EUR][1000 genomes]
rs73500434	0.84[EUR][1000 genomes]
rs73501009	0.91[EUR][1000 genomes]
rs73501017	0.93[EUR][1000 genomes]
rs73501018	0.93[EUR][1000 genomes]
rs73501023	0.93[EUR][1000 genomes]
rs73501037	0.82[EUR][1000 genomes]
rs73501038	0.81[EUR][1000 genomes]
rs73501048	0.84[EUR][1000 genomes]
rs73501059	0.82[EUR][1000 genomes]
rs73501064	0.84[EUR][1000 genomes]
rs73501065	0.84[EUR][1000 genomes]
rs73501069	0.82[EUR][1000 genomes]
rs73501097	0.84[EUR][1000 genomes]
rs7483997	0.93[EUR][1000 genomes]
rs7925527	0.82[EUR][1000 genomes]
rs7940096	0.81[EUR][1000 genomes]
rs7944654	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8191	0.84[EUR][1000 genomes]
rs958332	0.96[EUR][1000 genomes]

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34073800-34079000	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr11:34074200-34076800	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:34074200-34077200	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
4	chr11:34074600-34079200	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
5	chr11:34074800-34078800	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:34075200-34076800	Weak transcription	Lung	lung
7	chr11:34075200-34076800	Weak transcription	Pancreas	Pancrea
8	chr11:34075400-34076800	Weak transcription	Colonic Mucosa	Colon
9	chr11:34075400-34076800	Weak transcription	Esophagus	oesophagus
10	chr11:34075400-34076800	Weak transcription	Left Ventricle	heart
11	chr11:34075400-34077200	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:34075400-34087000	Weak transcription	Gastric	stomach
13	chr11:34075400-34094200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr11:34075400-34094400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:34075400-34103800	Weak transcription	Aorta	Aorta
16	chr11:34075600-34076800	Enhancers	Brain Cingulate Gyrus	brain
17	chr11:34075600-34076800	Enhancers	Colon Smooth Muscle	Colon
18	chr11:34075600-34076800	Weak transcription	Right Ventricle	heart
19	chr11:34075600-34077000	Weak transcription	Stomach Mucosa	stomach
20	chr11:34075600-34077400	Transcr. at gene 5' and 3'	Hela-S3	cervix
21	chr11:34075600-34078400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr11:34075600-34079000	Enhancers	Brain Hippocampus Middle	brain
23	chr11:34075600-34079400	Weak transcription	Psoas Muscle	Psoas
24	chr11:34075600-34082600	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr11:34075600-34082600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr11:34075600-34082800	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr11:34075600-34088400	Weak transcription	Right Atrium	heart
28	chr11:34075600-34093600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr11:34075600-34100200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr11:34075800-34076800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
31	chr11:34075800-34077000	Enhancers	Fetal Lung	lung
32	chr11:34075800-34077800	Enhancers	Liver	Liver
33	chr11:34075800-34078000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr11:34075800-34078400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr11:34075800-34079600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr11:34075800-34083400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr11:34075800-34093600	Weak transcription	HSMMtube	muscle
38	chr11:34076000-34076800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr11:34076000-34076800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr11:34076000-34076800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr11:34076000-34076800	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr11:34076000-34076800	Enhancers	NHEK	skin
43	chr11:34076000-34077200	Genic enhancers	Primary monocytes fromperipheralblood	blood
44	chr11:34076000-34077200	Enhancers	Primary B cells from cord blood	blood
45	chr11:34076000-34077200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr11:34076000-34077200	Genic enhancers	Fetal Muscle Leg	muscle
47	chr11:34076000-34077200	Enhancers	Ovary	ovary
48	chr11:34076000-34077400	Enhancers	Primary T cells from cord blood	blood
49	chr11:34076000-34077400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr11:34076000-34077600	Enhancers	Duodenum Smooth Muscle	Duodenum

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