Variant report

Variant	rs57636521
Chromosome Location	chr11:34076909-34076910
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:9)
CpG islands
(count:61)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:9 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:34076627-34077216	PFSK-1	brain:	n/a	n/a
2	POLR2A	chr11:34076545-34076922	GM12878	blood:	n/a	n/a
3	POLR2A	chr11:34076875-34077118	MCF-7	breast:	n/a	n/a
4	POLR2A	chr11:34076512-34077510	SK-N-MC	brain:	n/a	n/a
5	POLR2A	chr11:34076672-34076939	H1-hESC	embryonic stem cell:	n/a	n/a
6	HEY1	chr11:34076619-34076976	K562	blood:	n/a	n/a
7	POLR2A	chr11:34076711-34076912	HepG2	liver:	n/a	n/a
8	POLR2A	chr11:34076673-34077042	K562	blood:	n/a	n/a
9	POLR2A	chr11:34076396-34079153	K562	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:34076899-34076949	GM06990	blood:	n/a
2	chr11:34076899-34076949	GM19239	blood:	n/a
3	chr11:34076899-34076949	NB4	blood:	n/a
4	chr11:34076899-34076949	SK-N-SH_RA	brain:	n/a
5	chr11:34076899-34076949	BE2_C	brain:	n/a
6	chr11:34076899-34076949	NH-A	brain:	n/a
7	chr11:34076899-34076949	PANC-1	pancreas:	n/a
8	chr11:34076899-34076949	GM12891	blood:	n/a
9	chr11:34076899-34076949	H1-hESC	embryonic stem cell:	embryo
10	chr11:34076899-34076949	PFSK-1	brain:	n/a
11	chr11:34076899-34076949	ProgFib	skin:	n/a
12	chr11:34076899-34076949	K562	blood:	n/a
13	chr11:34076899-34076949	Jurkat	blood:	n/a
14	chr11:34076899-34076949	HAEpiC	amniotic membrane:	n/a
15	chr11:34076899-34076949	HCT-116	colon:	n/a
16	chr11:34076899-34076949	HNPCEpiC	eye:	n/a
17	chr11:34076899-34076949	HMEC	breast:	n/a
18	chr11:34076899-34076949	Hepatocyte	liver:	n/a
19	chr11:34076899-34076949	HL-60	blood:	n/a
20	chr11:34076899-34076949	SK-N-SH	brain:	n/a
21	chr11:34076899-34076949	HEK293	kidney:	embryo
22	chr11:34076899-34076949	NHDF-neo	bronchial:	n/a
23	chr11:34076899-34076949	RPTEC	kidney:	n/a
24	chr11:34076899-34076949	SAEC	small airway:	n/a
25	chr11:34076899-34076949	ovcar-3	ovarian:	n/a
26	chr11:34076899-34076949	HRPEpiC	eye:	n/a
27	chr11:34076899-34076949	HepG2	liver:	n/a
28	chr11:34076899-34076949	PrEC	prostate:	n/a
29	chr11:34076899-34076949	Caco-2	colon:	n/a
30	chr11:34076899-34076949	AG04449	skin:	fetal
31	chr11:34076899-34076949	GM12892	blood:	n/a
32	chr11:34076899-34076949	U87	brain:	n/a
33	chr11:34076899-34076949	MCF-7	breast:	n/a
34	chr11:34076899-34076949	AG04450	lung:	fetal
35	chr11:34076899-34076949	SKMC	muscle:	n/a
36	chr11:34076899-34076949	BJ	skin:	n/a
37	chr11:34076899-34076949	AoSMC	blood vessel:	n/a
38	chr11:34076899-34076949	A549	lung:	n/a
39	chr11:34076899-34076949	NT2-D1	testis:	n/a
40	chr11:34076899-34076949	HRCEpiC	kidney:	n/a
41	chr11:34076899-34076949	HEEpiC	esophagus:	n/a
42	chr11:34076899-34076949	HCF	heart:	n/a
43	chr11:34076899-34076949	NHBE	bronchial:	n/a
44	chr11:34076899-34076949	HUVEC	blood vessel:	n/a
45	chr11:34076899-34076949	GM12878	blood:	n/a
46	chr11:34076899-34076949	HRE	kidney:	n/a
47	chr11:34076899-34076949	HPAEpiC	pulmonary alveolar:	n/a
48	chr11:34076899-34076949	MCF10A-Er-Src	breast:	n/a
49	chr11:34076899-34076949	HCM	heart:	n/a
50	chr11:34076899-34076949	AG10803	skin:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34072006..34079358-chr11:34124269..34129390,19	K562	blood:
2	chr11:34070943..34077471-chr11:34125498..34130034,9	MCF-7	breast:

No data

Variant related genes	Relation type
CAPRIN1	TF binding region
CAPRIN1	CpG island
ENSG00000135372	Chromatin interaction

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10047428	0.89[EUR][1000 genomes]
rs10047487	0.89[EUR][1000 genomes]
rs10501132	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10836150	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11032506	0.84[AFR][1000 genomes]
rs11032507	0.84[AFR][1000 genomes]
rs11552143	0.81[EUR][1000 genomes]
rs12418005	0.84[AFR][1000 genomes]
rs12419629	0.84[AFR][1000 genomes]
rs16925114	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16925115	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16925121	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16925126	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16925134	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16925147	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16925153	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925155	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16925160	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs16925163	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs16925167	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs16925170	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs16925173	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs16925175	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs16925177	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs16925181	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs16925182	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs16925184	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs16926099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17367679	0.82[AFR][1000 genomes]
rs17699090	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17699505	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17699517	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17699883	0.81[EUR][1000 genomes]
rs17700132	0.81[EUR][1000 genomes]
rs17700360	0.81[EUR][1000 genomes]
rs17700714	0.81[EUR][1000 genomes]
rs17771981	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17777885	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17777985	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17778417	0.81[EUR][1000 genomes]
rs17778759	0.81[EUR][1000 genomes]
rs1883958	0.81[EUR][1000 genomes]
rs2004272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2421456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2421457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2421459	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28768368	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2957481	0.81[EUR][1000 genomes]
rs2957509	0.81[EUR][1000 genomes]
rs36117528	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4074368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4237663	0.89[EUR][1000 genomes]
rs4587708	0.89[EUR][1000 genomes]
rs4755357	0.86[EUR][1000 genomes]
rs4755359	0.89[EUR][1000 genomes]
rs4756095	0.84[EUR][1000 genomes]
rs4756096	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4756101	0.95[EUR][1000 genomes]
rs56693007	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs56696374	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56973150	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57330513	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57492451	0.81[EUR][1000 genomes]
rs58696677	0.91[AFR][1000 genomes]
rs58755000	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs59158919	0.81[EUR][1000 genomes]
rs59249605	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59518134	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs59650719	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59972955	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59978955	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60015864	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs60494596	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs60700110	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61171154	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6484694	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7102797	0.84[AFR][1000 genomes]
rs7104352	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7112219	0.84[EUR][1000 genomes]
rs7112450	0.84[EUR][1000 genomes]
rs7117217	0.84[AFR][1000 genomes]
rs7117410	0.84[AFR][1000 genomes]
rs7122992	0.84[EUR][1000 genomes]
rs7125948	0.84[AFR][1000 genomes]
rs7127581	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73486549	0.84[AFR][1000 genomes]
rs73486551	0.84[AFR][1000 genomes]
rs73497017	0.84[AFR][1000 genomes]
rs73497030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73497035	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73497050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73497064	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73501009	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73501017	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73501018	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73501023	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73501037	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs73501038	0.89[AFR][1000 genomes]
rs73501048	0.87[AFR][1000 genomes]
rs73501059	0.81[EUR][1000 genomes]
rs73501064	0.93[AFR][1000 genomes]
rs73501065	0.87[AFR][1000 genomes]
rs73501069	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs73501097	0.82[AFR][1000 genomes]
rs7483997	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7925202	0.84[AFR][1000 genomes]
rs7925527	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7940096	0.82[EUR][1000 genomes]
rs7944654	0.89[EUR][1000 genomes]
rs8191	0.88[AFR][1000 genomes]
rs958332	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34073800-34079000	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr11:34074200-34077200	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
3	chr11:34074600-34079200	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
4	chr11:34074800-34078800	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:34075400-34077200	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:34075400-34087000	Weak transcription	Gastric	stomach
7	chr11:34075400-34094200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr11:34075400-34094400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:34075400-34103800	Weak transcription	Aorta	Aorta
10	chr11:34075600-34077000	Weak transcription	Stomach Mucosa	stomach
11	chr11:34075600-34077400	Transcr. at gene 5' and 3'	Hela-S3	cervix
12	chr11:34075600-34078400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr11:34075600-34079000	Enhancers	Brain Hippocampus Middle	brain
14	chr11:34075600-34079400	Weak transcription	Psoas Muscle	Psoas
15	chr11:34075600-34082600	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr11:34075600-34082600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr11:34075600-34082800	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr11:34075600-34088400	Weak transcription	Right Atrium	heart
19	chr11:34075600-34093600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr11:34075600-34100200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr11:34075800-34077000	Enhancers	Fetal Lung	lung
22	chr11:34075800-34077800	Enhancers	Liver	Liver
23	chr11:34075800-34078000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr11:34075800-34078400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr11:34075800-34079600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr11:34075800-34083400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr11:34075800-34093600	Weak transcription	HSMMtube	muscle
28	chr11:34076000-34077200	Genic enhancers	Primary monocytes fromperipheralblood	blood
29	chr11:34076000-34077200	Enhancers	Primary B cells from cord blood	blood
30	chr11:34076000-34077200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr11:34076000-34077200	Genic enhancers	Fetal Muscle Leg	muscle
32	chr11:34076000-34077200	Enhancers	Ovary	ovary
33	chr11:34076000-34077400	Enhancers	Primary T cells from cord blood	blood
34	chr11:34076000-34077400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr11:34076000-34077600	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr11:34076000-34077600	Genic enhancers	Osteobl	bone
37	chr11:34076000-34077800	Transcr. at gene 5' and 3'	iPS-18 Cell Line	embryonic stem cell
38	chr11:34076000-34078200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr11:34076000-34078200	Weak transcription	Rectal Smooth Muscle	rectum
40	chr11:34076000-34078400	Weak transcription	Brain Angular Gyrus	brain
41	chr11:34076000-34078400	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr11:34076000-34079000	Enhancers	Fetal Heart	heart
43	chr11:34076000-34079200	Genic enhancers	Cortex derived primary cultured neurospheres	brain
44	chr11:34076200-34077000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr11:34076200-34077000	Enhancers	Primary hematopoietic stem cells	blood
46	chr11:34076200-34077200	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
47	chr11:34076200-34077200	Transcr. at gene 5' and 3'	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr11:34076200-34077200	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr11:34076200-34077200	Transcr. at gene 5' and 3'	Brain Germinal Matrix	brain
50	chr11:34076200-34077200	Genic enhancers	Fetal Muscle Trunk	muscle

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