Variant report

Variant	rs73497017
Chromosome Location	chr11:34071398-34071399
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:34071394-34071423	K562	blood:	n/a	n/a
2	POLR2A	chr11:34070322-34075592	SK-N-MC	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:34042157..34043774-chr11:34070520..34073015,2	MCF-7	breast:
2	chr11:34068673..34076707-chr11:34122442..34129826,21	K562	blood:
3	chr11:34070943..34077471-chr11:34125498..34130034,9	MCF-7	breast:
4	chr11:34071305..34076629-chr11:34124370..34130035,10	MCF-7	breast:

Variant related genes	Relation type
CAPRIN1	TF binding region
ENSG00000135372	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10768047	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11032506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11032507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11606854	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12418005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12418412	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12419629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925114	0.84[AFR][1000 genomes]
rs16925115	0.84[AFR][1000 genomes]
rs16925121	0.84[AFR][1000 genomes]
rs16925126	0.84[AFR][1000 genomes]
rs16925134	0.84[AFR][1000 genomes]
rs16925147	0.84[AFR][1000 genomes]
rs16925155	0.84[AFR][1000 genomes]
rs16926099	0.84[AFR][1000 genomes]
rs2004272	0.84[AFR][1000 genomes]
rs2421456	0.84[AFR][1000 genomes]
rs2421457	0.84[AFR][1000 genomes]
rs36117528	0.84[AFR][1000 genomes]
rs4074368	0.84[AFR][1000 genomes]
rs4237663	0.85[AFR][1000 genomes]
rs56696374	0.84[AFR][1000 genomes]
rs56973150	0.84[AFR][1000 genomes]
rs57330513	0.82[AFR][1000 genomes]
rs57636521	0.84[AFR][1000 genomes]
rs59249605	0.84[AFR][1000 genomes]
rs59650719	0.82[AFR][1000 genomes]
rs60700110	0.84[AFR][1000 genomes]
rs61171154	0.84[AFR][1000 genomes]
rs6484694	0.85[AFR][1000 genomes]
rs7102797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7104352	0.84[AFR][1000 genomes]
rs7117217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7117410	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7125948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73486549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73486551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73497025	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73497030	0.84[AFR][1000 genomes]
rs73497050	0.84[AFR][1000 genomes]
rs73501009	0.84[AFR][1000 genomes]
rs73501017	0.84[AFR][1000 genomes]
rs73501018	0.84[AFR][1000 genomes]
rs73501023	0.84[AFR][1000 genomes]
rs7483997	0.84[AFR][1000 genomes]
rs7925202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7951306	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7951543	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34066400-34072600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:34066800-34072000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:34066800-34072200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr11:34067000-34071400	Weak transcription	HSMM	muscle
5	chr11:34067000-34071600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:34067000-34071600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:34067000-34071600	Weak transcription	HSMMtube	muscle
8	chr11:34067000-34072000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:34067000-34072200	Weak transcription	GM12878-XiMat	blood
10	chr11:34067000-34072400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr11:34067200-34071400	Weak transcription	NHDF-Ad	bronchial
12	chr11:34067200-34071600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:34067200-34071800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr11:34067200-34071800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:34067200-34071800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr11:34067200-34071800	Weak transcription	HMEC	breast
17	chr11:34067200-34071800	Weak transcription	NH-A	brain
18	chr11:34067200-34072000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr11:34067200-34072000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:34067200-34072000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:34067200-34072000	Weak transcription	Stomach Mucosa	stomach
22	chr11:34067200-34072400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr11:34067200-34072600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:34067400-34071600	Weak transcription	Osteobl	bone
25	chr11:34067400-34071800	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr11:34067400-34071800	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr11:34067400-34071800	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr11:34067400-34071800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr11:34067400-34072000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr11:34067400-34072000	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr11:34067400-34072200	Weak transcription	HUVEC	blood vessel
32	chr11:34067600-34072000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr11:34067600-34072000	Weak transcription	A549	lung
34	chr11:34067800-34071600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr11:34067800-34071600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr11:34067800-34071600	Weak transcription	NHEK	skin
37	chr11:34067800-34071800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr11:34067800-34071800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr11:34067800-34072200	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr11:34068200-34072200	Weak transcription	Fetal Brain Male	brain
41	chr11:34070400-34071600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr11:34070400-34072000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:34070600-34071800	Enhancers	K562	blood
44	chr11:34070600-34072600	Enhancers	Placenta	Placenta
45	chr11:34070800-34071800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr11:34070800-34071800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr11:34071200-34071600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr11:34071200-34071600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr11:34071200-34072200	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr11:34071200-34072200	Weak transcription	Monocytes-CD14+_RO01746	blood

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