Variant report

Variant	rs73497030
Chromosome Location	chr11:34075544-34075545
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:34075373-34075547	MCF-7	breast:	n/a	n/a
2	POLR2A	chr11:34075323-34075670	K562	blood:	n/a	n/a
3	POLR2A	chr11:34072553-34075638	MCF10A-Er-Src	breast:	n/a	n/a
4	TBL1XR1	chr11:34074729-34075642	K562	blood:	n/a	n/a
5	IRF1	chr11:34074781-34075599	K562	blood:	n/a	chr11:34075075-34075086 chr11:34075074-34075085 chr11:34075072-34075085
6	POLR2A	chr11:34071825-34075659	GM12891	blood:	n/a	n/a
7	REST	chr11:34072242-34075617	H1-neurons	neurons:	n/a	chr11:34075029-34075042 chr11:34073259-34073269 chr11:34073414-34073427 chr11:34072857-34072870 chr11:34072949-34072969 chr11:34072949-34072969
8	POLR2A	chr11:34071900-34075767	SK-N-MC	brain:	n/a	n/a
9	MXI1	chr11:34072057-34076116	SK-N-SH	brain:	n/a	n/a
10	MAZ	chr11:34072375-34076034	IMR90	lung:	n/a	chr11:34074478-34074488
11	POLR2A	chr11:34070322-34075592	SK-N-MC	brain:	n/a	n/a
12	POLR2A	chr11:34072507-34075587	K562	blood:	n/a	n/a
13	POLR2A	chr11:34072793-34075648	GM12878	blood:	n/a	n/a
14	IRF1	chr11:34074831-34075661	K562	blood:	n/a	chr11:34075075-34075086 chr11:34075074-34075085 chr11:34075072-34075085
15	MYC	chr11:34074808-34075549	MCF10A-Er-Src	breast:	n/a	chr11:34074995-34075005
16	MXI1	chr11:34072475-34075662	IMR90	lung:	n/a	n/a
17	POLR2A	chr11:34072620-34075590	Hela-S3	cervix:	n/a	n/a
18	EP300	chr11:34075507-34075580	GM12878	blood:	n/a	n/a
19	STAT3	chr11:34075311-34075597	MCF10A-Er-Src	breast:	n/a	chr11:34075513-34075522 chr11:34075508-34075528 chr11:34075512-34075523 chr11:34075514-34075523 chr11:34075511-34075525
20	STAT3	chr11:34075403-34075630	MCF10A-Er-Src	breast:	n/a	chr11:34075513-34075522 chr11:34075508-34075528 chr11:34075512-34075523 chr11:34075514-34075523 chr11:34075511-34075525
21	POLR2A	chr11:34072198-34075546	PFSK-1	brain:	n/a	n/a
22	CHD1	chr11:34073635-34075733	H1-hESC	embryonic stem cell:	n/a	n/a
23	HCFC1	chr11:34072225-34075832	Hela-S3	cervix:	n/a	n/a
24	POLR2A	chr11:34072781-34075595	GM12878	blood:	n/a	n/a
25	POLR2A	chr11:34071426-34076005	K562	blood:	n/a	n/a
26	CHD1	chr11:34073633-34075715	GM12878	blood:	n/a	n/a
27	CHD1	chr11:34072421-34075781	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:34074052..34075664-chr12:52445107..52446753,2	MCF-7	breast:
2	chr11:34072966..34075629-chr11:34112119..34114294,2	MCF-7	breast:
3	chr11:34072006..34079358-chr11:34124269..34129390,19	K562	blood:
4	chr11:34068673..34076707-chr11:34122442..34129826,21	K562	blood:
5	chr11:34070943..34077471-chr11:34125498..34130034,9	MCF-7	breast:
6	chr11:34071305..34076629-chr11:34124370..34130035,10	MCF-7	breast:
7	chr11:34071981..34076766-chr11:34377622..34383038,7	MCF-7	breast:

Variant related genes	Relation type
CAPRIN1	TF binding region
ENSG00000166016	Chromatin interaction
ENSG00000135372	Chromatin interaction
ENSG00000135387	Chromatin interaction
ENSG00000123358	Chromatin interaction

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs10047428	0.93[EUR][1000 genomes]
rs10047487	0.93[EUR][1000 genomes]
rs10501132	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10501133	0.80[EUR][1000 genomes]
rs10836150	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11032506	0.84[AFR][1000 genomes]
rs11032507	0.84[AFR][1000 genomes]
rs11552143	0.84[EUR][1000 genomes]
rs12418005	0.84[AFR][1000 genomes]
rs12419629	0.84[AFR][1000 genomes]
rs16925114	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16925115	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16925121	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16925126	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16925134	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16925147	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16925153	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16925155	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16925160	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs16925163	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs16925167	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs16925170	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs16925173	0.92[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs16925175	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs16925177	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs16925181	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs16925182	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs16925184	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs16925219	0.80[EUR][1000 genomes]
rs16926099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17367679	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs17699090	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17699505	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17699517	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17699883	0.84[EUR][1000 genomes]
rs17700132	0.84[EUR][1000 genomes]
rs17700360	0.84[EUR][1000 genomes]
rs17700714	0.84[EUR][1000 genomes]
rs17700877	0.80[EUR][1000 genomes]
rs17701015	0.80[EUR][1000 genomes]
rs17771981	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17777885	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17777985	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17778417	0.84[EUR][1000 genomes]
rs17778759	0.84[EUR][1000 genomes]
rs1883958	0.84[EUR][1000 genomes]
rs2004272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2421456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2421457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2421459	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28768368	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2957481	0.84[EUR][1000 genomes]
rs2957509	0.84[EUR][1000 genomes]
rs2982587	0.82[EUR][1000 genomes]
rs36117528	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4074368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4237663	0.93[EUR][1000 genomes]
rs4587708	0.93[EUR][1000 genomes]
rs4755357	0.89[EUR][1000 genomes]
rs4755359	0.93[EUR][1000 genomes]
rs4756095	0.81[EUR][1000 genomes]
rs4756096	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4756101	0.98[EUR][1000 genomes]
rs56693007	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs56696374	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56973150	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57330513	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57492451	0.84[EUR][1000 genomes]
rs57636521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58696677	0.91[AFR][1000 genomes]
rs58755000	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs59158919	0.84[EUR][1000 genomes]
rs59249605	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59518134	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs59650719	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59972955	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59978955	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60015864	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs60494596	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs60549862	0.80[EUR][1000 genomes]
rs60700110	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61171154	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6484694	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7102797	0.84[AFR][1000 genomes]
rs7104352	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7112219	0.81[EUR][1000 genomes]
rs7112450	0.81[EUR][1000 genomes]
rs7117217	0.84[AFR][1000 genomes]
rs7117410	0.84[AFR][1000 genomes]
rs7122992	0.81[EUR][1000 genomes]
rs7125948	0.84[AFR][1000 genomes]
rs7127581	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73486549	0.84[AFR][1000 genomes]
rs73486551	0.84[AFR][1000 genomes]
rs73497017	0.84[AFR][1000 genomes]
rs73497035	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73497050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73497064	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73500434	0.82[EUR][1000 genomes]
rs73501009	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73501017	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73501018	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73501023	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73501037	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs73501038	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs73501048	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs73501059	0.84[EUR][1000 genomes]
rs73501064	0.93[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs73501065	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs73501069	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs73501097	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7483997	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7925202	0.84[AFR][1000 genomes]
rs7925527	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7933297	0.80[EUR][1000 genomes]
rs7944654	0.93[EUR][1000 genomes]
rs8191	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs958332	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34072200-34075600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr11:34072200-34076200	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr11:34072400-34075600	Active TSS	Psoas Muscle	Psoas
4	chr11:34072400-34075600	Active TSS	Right Ventricle	heart
5	chr11:34072400-34075800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:34072400-34075800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:34072400-34075800	Active TSS	HSMMtube	muscle
8	chr11:34072400-34076000	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr11:34072400-34076000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:34072400-34076200	Active TSS	H9 Cell Line	embryonic stem cell
11	chr11:34072400-34076400	Active TSS	Breast Myoepithelial Primary Cells	Breast
12	chr11:34072400-34076400	Active TSS	Fetal Brain Female	brain
13	chr11:34072400-34076400	Active TSS	GM12878-XiMat	blood
14	chr11:34072400-34076600	Active TSS	H1 Cell Line	embryonic stem cell
15	chr11:34072400-34076600	Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr11:34072600-34075600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
17	chr11:34072600-34075600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:34072600-34075600	Active TSS	Primary T killer memory cells from peripheral blood	blood
19	chr11:34072600-34075600	Active TSS	Duodenum Mucosa	Duodenum
20	chr11:34072600-34075600	Active TSS	Sigmoid Colon	Sigmoid Colon
21	chr11:34072600-34075600	Active TSS	Stomach Smooth Muscle	stomach
22	chr11:34072600-34076000	Active TSS	iPS-18 Cell Line	embryonic stem cell
23	chr11:34072600-34076000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:34072600-34076000	Active TSS	Fetal Kidney	kidney
25	chr11:34072600-34076000	Active TSS	Fetal Thymus	thymus
26	chr11:34072600-34076000	Active TSS	Rectal Mucosa Donor 29	rectum
27	chr11:34072600-34076200	Active TSS	HUES64 Cell Line	embryonic stem cell
28	chr11:34072600-34076200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr11:34072600-34076200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr11:34072600-34076400	Active TSS	HUES48 Cell Line	embryonic stem cell
31	chr11:34072600-34076400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:34072800-34075600	Active TSS	Primary T cells fromperipheralblood	blood
33	chr11:34072800-34075600	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
34	chr11:34072800-34075600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:34072800-34075600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
36	chr11:34072800-34075600	Active TSS	Placenta	Placenta
37	chr11:34072800-34075600	Active TSS	Small Intestine	intestine
38	chr11:34072800-34075600	Active TSS	Hela-S3	cervix
39	chr11:34072800-34075600	Active TSS	HUVEC	blood vessel
40	chr11:34072800-34075600	Active TSS	Osteobl	bone
41	chr11:34072800-34075800	Active TSS	Primary T helper cells PMA-I stimulated	--
42	chr11:34072800-34075800	Active TSS	Fetal Muscle Leg	muscle
43	chr11:34072800-34075800	Active TSS	NHDF-Ad	bronchial
44	chr11:34072800-34075800	Active TSS	NHEK	skin
45	chr11:34072800-34076000	Active TSS	Fetal Intestine Large	intestine
46	chr11:34072800-34076000	Active TSS	Fetal Stomach	stomach
47	chr11:34072800-34076000	Active TSS	Thymus	Thymus
48	chr11:34072800-34076000	Active TSS	HMEC	breast
49	chr11:34072800-34076000	Active TSS	HSMM	muscle
50	chr11:34072800-34076200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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