Variant report

Variant	rs59650719
Chromosome Location	chr11:34095142-34095143
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34082446..34085932-chr11:34091734..34095949,3	MCF-7	breast:
2	chr11:34094865..34097334-chr11:34103364..34106119,3	K562	blood:
3	chr11:34070782..34075925-chr11:34090363..34101891,14	MCF-7	breast:
4	chr11:34093333..34095237-chr11:34096530..34098853,2	K562	blood:

Variant related genes	Relation type
ENSG00000135387	Chromatin interaction

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10047428	0.98[EUR][1000 genomes]
rs10047487	0.98[EUR][1000 genomes]
rs10501132	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10501133	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10836150	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11032506	0.82[AFR][1000 genomes]
rs11032507	0.82[AFR][1000 genomes]
rs11552143	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12418005	0.82[AFR][1000 genomes]
rs12419629	0.82[AFR][1000 genomes]
rs16925114	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925115	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925121	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925126	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925134	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925147	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925153	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16925155	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925160	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925163	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925167	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925170	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925173	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925175	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925177	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925181	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925182	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925184	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925219	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16926099	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17367679	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17699090	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17699505	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17699517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17699883	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17700132	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17700360	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17700714	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17700877	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17701015	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17771981	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17777885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17777985	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17778417	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17778759	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1883958	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2004272	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2421456	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2421457	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2421459	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2467392	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2467393	0.84[EUR][1000 genomes]
rs2473929	0.84[EUR][1000 genomes]
rs2473932	0.82[EUR][1000 genomes]
rs28768368	0.84[AMR][1000 genomes]
rs2957481	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2957509	0.89[EUR][1000 genomes]
rs2957514	0.84[EUR][1000 genomes]
rs2982587	0.87[EUR][1000 genomes]
rs2982617	0.82[EUR][1000 genomes]
rs2982619	0.84[EUR][1000 genomes]
rs36117528	0.99[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4074368	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4237663	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4587708	0.98[EUR][1000 genomes]
rs4755357	0.95[EUR][1000 genomes]
rs4755358	0.83[EUR][1000 genomes]
rs4755359	0.98[EUR][1000 genomes]
rs4756096	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4756101	0.93[EUR][1000 genomes]
rs56693007	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56696374	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56973150	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57330513	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57492451	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57636521	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58696677	0.90[AFR][1000 genomes]
rs58755000	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59158919	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59249605	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59359577	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59518134	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59972955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59978955	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60015864	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60494596	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60549862	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60700110	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61171154	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6484694	0.95[EUR][1000 genomes]
rs7102797	0.82[AFR][1000 genomes]
rs7104352	0.99[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7117217	0.82[AFR][1000 genomes]
rs7117410	0.82[AFR][1000 genomes]
rs7125948	0.82[AFR][1000 genomes]
rs7127581	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73486549	0.82[AFR][1000 genomes]
rs73486551	0.82[AFR][1000 genomes]
rs73497017	0.82[AFR][1000 genomes]
rs73497030	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73497035	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73497050	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73497064	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73500434	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73501009	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73501017	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73501018	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73501023	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73501037	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73501038	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73501048	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73501059	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73501064	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73501065	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73501069	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73501097	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7483997	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7925202	0.82[AFR][1000 genomes]
rs7925527	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7933297	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7944654	0.98[EUR][1000 genomes]
rs8191	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs958332	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34075400-34103800	Weak transcription	Aorta	Aorta
2	chr11:34075600-34100200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:34077000-34100600	Weak transcription	Esophagus	oesophagus
4	chr11:34079000-34126600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:34083400-34126600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:34083600-34124800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:34088600-34110800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr11:34088600-34124600	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:34088800-34095800	Strong transcription	Hela-S3	cervix
10	chr11:34088800-34124000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr11:34089600-34104000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr11:34089800-34095400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:34089800-34096200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:34090000-34096000	Strong transcription	HSMM	muscle
15	chr11:34090000-34096200	Weak transcription	Spleen	Spleen
16	chr11:34090000-34096400	Weak transcription	Small Intestine	intestine
17	chr11:34090000-34097800	Weak transcription	Pancreas	Pancrea
18	chr11:34090000-34100400	Weak transcription	Psoas Muscle	Psoas
19	chr11:34090000-34100600	Weak transcription	Right Ventricle	heart
20	chr11:34090400-34096800	Weak transcription	Brain Angular Gyrus	brain
21	chr11:34090400-34102000	Weak transcription	Fetal Heart	heart
22	chr11:34091000-34095800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:34091000-34123400	Strong transcription	Fetal Muscle Trunk	muscle
24	chr11:34091000-34123400	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr11:34091200-34123600	Strong transcription	Dnd41	blood
26	chr11:34091600-34095400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:34091600-34123800	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr11:34091600-34124200	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr11:34091800-34096600	Strong transcription	Fetal Intestine Small	intestine
30	chr11:34091800-34096800	Strong transcription	Fetal Stomach	stomach
31	chr11:34091800-34102600	Strong transcription	K562	blood
32	chr11:34091800-34123400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr11:34091800-34124200	Strong transcription	Fetal Thymus	thymus
34	chr11:34091800-34124600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr11:34091800-34124800	Strong transcription	Fetal Intestine Large	intestine
36	chr11:34092000-34119800	Strong transcription	Primary neutrophils fromperipheralblood	blood
37	chr11:34092200-34098800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr11:34092600-34102400	Strong transcription	Fetal Kidney	kidney
39	chr11:34092600-34106600	Strong transcription	Primary hematopoietic stem cells	blood
40	chr11:34092600-34110600	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr11:34092600-34122200	Strong transcription	Fetal Brain Female	brain
42	chr11:34092600-34123000	Strong transcription	GM12878-XiMat	blood
43	chr11:34092600-34123400	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr11:34092600-34124800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr11:34092600-34125000	Strong transcription	Liver	Liver
46	chr11:34092800-34096000	Weak transcription	Stomach Mucosa	stomach
47	chr11:34092800-34096200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr11:34093000-34095400	Strong transcription	Osteobl	bone
49	chr11:34093000-34095600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr11:34093000-34096600	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links