Variant report

Variant	rs2473932
Chromosome Location	chr11:34170701-34170702
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:34157193..34160201-chr11:34169377..34172451,3	K562	blood:
2	chr11:34157193..34160201-chr11:34169377..34173390,4	K562	blood:
3	chr11:34150828..34152379-chr11:34169047..34171261,2	K562	blood:
4	chr11:34170082..34170878-chr11:34380526..34381351,2	K562	blood:
5	chr11:34169201..34171584-chr11:34378807..34380601,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NAT10-1	chr11:34170593-34170940	NONHSAT018744

No data

Variant related genes	Relation type
ENSG00000166016	Chromatin interaction

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10047428	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs10047487	0.84[EUR][1000 genomes]
rs10501132	1.00[CEU][hapmap]
rs10501133	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10836150	0.89[CEU][hapmap]
rs11552143	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16925114	1.00[CEU][hapmap]
rs16925115	1.00[CEU][hapmap]
rs16925121	1.00[CEU][hapmap];0.81[YRI][hapmap];0.82[EUR][1000 genomes]
rs16925126	1.00[CEU][hapmap];0.81[YRI][hapmap];0.82[EUR][1000 genomes]
rs16925134	1.00[CEU][hapmap];0.81[YRI][hapmap];0.82[EUR][1000 genomes]
rs16925147	1.00[CEU][hapmap];0.81[YRI][hapmap];0.82[EUR][1000 genomes]
rs16925153	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16925155	1.00[CEU][hapmap];0.81[YRI][hapmap];0.82[EUR][1000 genomes]
rs16925160	1.00[CEU][hapmap];0.80[YRI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16925163	1.00[CEU][hapmap];0.80[YRI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16925167	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16925170	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16925173	1.00[CEU][hapmap];0.81[YRI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16925175	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16925177	1.00[CEU][hapmap];0.81[YRI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16925181	1.00[CEU][hapmap];0.81[YRI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16925182	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16925183	1.00[CEU][hapmap]
rs16925184	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16925219	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17367679	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17699505	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17699517	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17699883	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17700132	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17700360	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17700714	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17700877	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17701015	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17777885	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17777985	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17778417	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17778759	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1883958	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2421459	0.89[CEU][hapmap]
rs2467392	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2467393	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2473929	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2957481	1.00[CEU][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2957509	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2957514	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2982587	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2982617	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2982619	1.00[CEU][hapmap];0.91[YRI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36117528	0.81[EUR][1000 genomes]
rs4237663	1.00[CEU][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4587708	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs4755357	0.81[EUR][1000 genomes]
rs4755359	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs4756109	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs56693007	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56696374	0.82[EUR][1000 genomes]
rs56973150	0.82[EUR][1000 genomes]
rs57330513	0.82[EUR][1000 genomes]
rs57492451	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58755000	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59158919	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59249605	0.82[EUR][1000 genomes]
rs59359577	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59518134	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59650719	0.82[EUR][1000 genomes]
rs59972955	0.82[EUR][1000 genomes]
rs59978955	0.85[AMR][1000 genomes]
rs60015864	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60494596	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60549862	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60700110	0.82[EUR][1000 genomes]
rs61171154	0.82[EUR][1000 genomes]
rs6484694	0.81[EUR][1000 genomes]
rs7104352	0.91[CEU][hapmap];0.81[YRI][hapmap]
rs7122992	0.81[CEU][hapmap]
rs73500434	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73501009	0.80[EUR][1000 genomes]
rs73501017	0.82[EUR][1000 genomes]
rs73501018	0.82[EUR][1000 genomes]
rs73501023	0.82[EUR][1000 genomes]
rs73501037	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73501038	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73501048	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73501059	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73501064	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73501065	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73501069	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73501097	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7483997	1.00[CEU][hapmap];0.81[YRI][hapmap];0.82[EUR][1000 genomes]
rs7925527	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7933297	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7944654	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7951527	1.00[CEU][hapmap]
rs8191	1.00[CEU][hapmap];0.81[YRI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs958332	0.91[CEU][hapmap];0.81[YRI][hapmap]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34128600-34173200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
2	chr11:34128600-34176400	Strong transcription	Fetal Stomach	stomach
3	chr11:34128800-34178000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:34129000-34177400	Strong transcription	Osteobl	bone
5	chr11:34129000-34177800	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr11:34129200-34174600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:34129200-34177800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:34129400-34172600	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr11:34129400-34173400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:34129400-34175600	Strong transcription	Fetal Thymus	thymus
11	chr11:34129600-34171400	Strong transcription	Fetal Muscle Trunk	muscle
12	chr11:34129600-34171800	Strong transcription	Fetal Muscle Leg	muscle
13	chr11:34129600-34172800	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr11:34129600-34175000	Strong transcription	Brain Anterior Caudate	brain
15	chr11:34129600-34177200	Strong transcription	Skeletal Muscle Female	skeletal muscle
16	chr11:34129600-34178200	Strong transcription	Liver	Liver
17	chr11:34129800-34171800	Strong transcription	Duodenum Mucosa	Duodenum
18	chr11:34129800-34172000	Strong transcription	Fetal Intestine Large	intestine
19	chr11:34129800-34172800	Strong transcription	Ovary	ovary
20	chr11:34129800-34173200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr11:34129800-34173200	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr11:34129800-34175000	Strong transcription	Primary T cells from cord blood	blood
23	chr11:34129800-34175000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr11:34129800-34175600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr11:34130000-34171000	Strong transcription	Duodenum Smooth Muscle	Duodenum
26	chr11:34130000-34172400	Strong transcription	HepG2	liver
27	chr11:34130000-34173600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr11:34130000-34174600	Strong transcription	Dnd41	blood
29	chr11:34130000-34177000	Strong transcription	Sigmoid Colon	Sigmoid Colon
30	chr11:34130000-34181800	Strong transcription	A549	lung
31	chr11:34130200-34172800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr11:34130200-34173200	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr11:34130200-34177600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:34132000-34171400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr11:34136200-34177200	Strong transcription	Adipose Nuclei	Adipose
36	chr11:34136200-34177200	Strong transcription	Skeletal Muscle Male	skeletal muscle
37	chr11:34138800-34185600	Strong transcription	Fetal Brain Female	brain
38	chr11:34143800-34173000	Strong transcription	Hela-S3	cervix
39	chr11:34146200-34187600	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr11:34146600-34171400	Strong transcription	Fetal Intestine Small	intestine
41	chr11:34148000-34176200	Strong transcription	Brain Hippocampus Middle	brain
42	chr11:34148600-34172000	Strong transcription	Placenta Amnion	Placenta Amnion
43	chr11:34149000-34172200	Strong transcription	HMEC	breast
44	chr11:34149200-34170800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:34149800-34172000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:34150400-34173800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr11:34150600-34175200	Strong transcription	Gastric	stomach
48	chr11:34150600-34178000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr11:34150800-34174200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr11:34150800-34177200	Strong transcription	HUES64 Cell Line	embryonic stem cell

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