Variant report

Variant	rs4756109
Chromosome Location	chr11:34183889-34183890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34182837..34186154-chr11:34188014..34190640,4	MCF-7	breast:
2	chr11:34183762..34186586-chr11:34186799..34189567,2	MCF-7	breast:
3	chr11:34183352..34185372-chr11:34378180..34380637,3	MCF-7	breast:
4	chr11:34182869..34184565-chr11:34366720..34369400,2	K562	blood:
5	chr11:34074463..34076519-chr11:34183006..34184539,2	K562	blood:

Variant related genes	Relation type
ENSG00000135387	Chromatin interaction
ENSG00000166016	Chromatin interaction

rs_ID	r²[population]
rs10047428	1.00[CEU][hapmap]
rs10501132	0.91[CEU][hapmap]
rs10501133	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs10836150	0.80[CEU][hapmap]
rs16925114	0.90[CEU][hapmap]
rs16925115	0.90[CEU][hapmap]
rs16925121	0.91[CEU][hapmap]
rs16925126	0.91[CEU][hapmap]
rs16925134	0.91[CEU][hapmap]
rs16925147	0.91[CEU][hapmap]
rs16925153	0.90[CEU][hapmap]
rs16925155	0.90[CEU][hapmap]
rs16925160	0.91[CEU][hapmap]
rs16925163	0.91[CEU][hapmap]
rs16925167	0.90[CEU][hapmap]
rs16925170	0.90[CEU][hapmap]
rs16925173	0.91[CEU][hapmap]
rs16925175	0.90[CEU][hapmap]
rs16925177	0.91[CEU][hapmap]
rs16925181	0.91[CEU][hapmap]
rs16925182	0.90[CEU][hapmap]
rs16925183	0.90[CEU][hapmap]
rs16925184	0.90[CEU][hapmap]
rs16925219	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs17367679	0.90[CEU][hapmap]
rs17699505	0.91[CEU][hapmap]
rs17699517	0.90[CEU][hapmap]
rs17699883	0.88[CEU][hapmap]
rs17700132	0.90[CEU][hapmap]
rs17700360	0.90[CEU][hapmap]
rs17700714	0.90[CEU][hapmap]
rs17700877	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs17701015	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs17777885	0.90[CEU][hapmap]
rs17777985	0.89[CEU][hapmap]
rs17778417	0.91[CEU][hapmap]
rs17778759	0.90[CEU][hapmap]
rs1883958	0.91[CEU][hapmap]
rs2421459	0.80[CEU][hapmap]
rs2467392	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs2467393	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs2473921	1.00[ASN][1000 genomes]
rs2473929	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs2473932	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs2957481	0.91[CEU][hapmap]
rs2957509	0.90[CEU][hapmap]
rs2957514	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs2982587	0.90[CEU][hapmap]
rs2982617	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs2982619	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs4237663	0.91[CEU][hapmap]
rs4587708	0.90[CEU][hapmap]
rs4755359	0.91[CEU][hapmap]
rs4756110	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60549862	0.81[EUR][1000 genomes]
rs7104352	0.82[CEU][hapmap]
rs7483997	0.91[CEU][hapmap]
rs7925527	0.91[CEU][hapmap]
rs7933297	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs7944654	0.91[CEU][hapmap]
rs7951527	0.90[CEU][hapmap]
rs8191	0.91[CEU][hapmap]
rs958332	0.82[CEU][hapmap]

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34138800-34185600	Strong transcription	Fetal Brain Female	brain
2	chr11:34146200-34187600	Strong transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:34152200-34184800	Strong transcription	Brain Germinal Matrix	brain
4	chr11:34152400-34186600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:34165800-34184600	Weak transcription	Stomach Mucosa	stomach
6	chr11:34169600-34196200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:34172400-34185200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:34172600-34190400	Strong transcription	Fetal Intestine Small	intestine
9	chr11:34173200-34195600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr11:34173400-34189400	Strong transcription	HSMMtube	muscle
11	chr11:34173800-34185000	Strong transcription	Duodenum Mucosa	Duodenum
12	chr11:34174400-34184000	Weak transcription	Fetal Intestine Large	intestine
13	chr11:34174400-34190800	Weak transcription	Colonic Mucosa	Colon
14	chr11:34174600-34193400	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr11:34175400-34187400	Weak transcription	HMEC	breast
16	chr11:34176000-34186600	Weak transcription	Esophagus	oesophagus
17	chr11:34176600-34188600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr11:34176800-34184800	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr11:34176800-34187400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr11:34176800-34195600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr11:34177000-34196200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr11:34177200-34184200	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr11:34177200-34190200	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr11:34177400-34187200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:34177400-34195400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr11:34177600-34187200	Weak transcription	NHEK	skin
27	chr11:34177600-34194600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr11:34177600-34196200	Weak transcription	Primary T cells from cord blood	blood
29	chr11:34177800-34188200	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr11:34177800-34195800	Weak transcription	Spleen	Spleen
31	chr11:34177800-34196000	Weak transcription	GM12878-XiMat	blood
32	chr11:34178000-34185600	Weak transcription	Colon Smooth Muscle	Colon
33	chr11:34178000-34187400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr11:34178000-34188000	Weak transcription	Aorta	Aorta
35	chr11:34178800-34184800	Strong transcription	Brain Anterior Caudate	brain
36	chr11:34178800-34192600	Strong transcription	Skeletal Muscle Male	skeletal muscle
37	chr11:34178800-34195200	Weak transcription	Hela-S3	cervix
38	chr11:34179000-34184200	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr11:34179200-34191000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr11:34179200-34195400	Weak transcription	Adipose Nuclei	Adipose
41	chr11:34179400-34196000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr11:34179600-34189400	Weak transcription	Lung	lung
43	chr11:34179600-34193600	Strong transcription	Liver	Liver
44	chr11:34180000-34195200	Strong transcription	HepG2	liver
45	chr11:34180600-34185200	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr11:34180600-34195400	Weak transcription	Fetal Thymus	thymus
47	chr11:34180800-34188000	Weak transcription	NHLF	lung
48	chr11:34180800-34189400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr11:34181000-34190000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr11:34181200-34186400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links