Variant report

Variant	rs60549862
Chromosome Location	chr11:34157276-34157277
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXM1	chr11:34156973-34157392	GM12878	blood:	n/a	n/a
2	BATF	chr11:34156984-34157402	GM12878	blood:	n/a	chr11:34157208-34157219
3	NFIC	chr11:34156996-34157474	GM12878	blood:	n/a	n/a
4	BATF	chr11:34157023-34157358	GM12878	blood:	n/a	chr11:34157208-34157219
5	IRF4	chr11:34157002-34157356	GM12878	blood:	n/a	n/a
6	EP300	chr11:34157188-34157322	GM12878	blood:	n/a	n/a
7	ATF2	chr11:34156955-34157360	GM12878	blood:	n/a	n/a
8	BCLAF1	chr11:34156973-34157400	GM12878	blood:	n/a	n/a
9	TAL1	chr11:34157110-34157289	K562	blood:	n/a	n/a
10	BHLHE40	chr11:34157073-34157303	GM12878	blood:	n/a	n/a
11	RUNX3	chr11:34156969-34157400	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:34156482..34158095-chr11:34165445..34167559,2	K562	blood:
2	chr11:34154957..34156550-chr11:34156914..34159003,2	K562	blood:
3	chr11:34157193..34160201-chr11:34169377..34172451,3	K562	blood:
4	chr11:34157193..34160201-chr11:34169377..34173390,4	K562	blood:

Variant related genes	Relation type
NAT10	TF binding region

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10047428	0.84[EUR][1000 genomes]
rs10047487	0.84[EUR][1000 genomes]
rs10501132	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10501133	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11552143	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925114	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16925115	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16925121	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16925126	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16925134	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16925147	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16925153	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16925155	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16925160	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925163	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925167	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925170	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925173	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925175	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925177	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925181	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925182	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925184	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925219	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16926099	0.82[EUR][1000 genomes]
rs17367679	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17699090	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs17699505	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17699517	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17699883	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17700132	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17700360	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17700714	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17700877	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17701015	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17771981	0.82[EUR][1000 genomes]
rs17777885	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17777985	0.86[EUR][1000 genomes]
rs17778417	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17778759	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1883958	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2004272	0.82[EUR][1000 genomes]
rs2421456	0.82[EUR][1000 genomes]
rs2421457	0.82[EUR][1000 genomes]
rs2467392	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2467393	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2473929	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2473932	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2957481	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2957509	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2957514	0.98[EUR][1000 genomes]
rs2982587	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2982617	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2982619	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36117528	0.81[EUR][1000 genomes]
rs4074368	0.82[EUR][1000 genomes]
rs4237663	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4587708	0.84[EUR][1000 genomes]
rs4755357	0.81[EUR][1000 genomes]
rs4755359	0.84[EUR][1000 genomes]
rs4756109	0.81[EUR][1000 genomes]
rs56693007	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56696374	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56973150	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57330513	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57492451	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58755000	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59158919	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59249605	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59359577	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59518134	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59650719	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59972955	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59978955	0.85[AMR][1000 genomes]
rs60015864	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60494596	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60700110	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61171154	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6484694	0.81[EUR][1000 genomes]
rs7127581	0.82[EUR][1000 genomes]
rs73497030	0.80[EUR][1000 genomes]
rs73497035	0.81[EUR][1000 genomes]
rs73497050	0.82[EUR][1000 genomes]
rs73497064	0.82[EUR][1000 genomes]
rs73500434	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73501009	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73501017	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73501018	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73501023	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73501037	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73501038	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73501048	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73501059	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73501064	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73501065	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73501069	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73501097	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7483997	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7925527	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7933297	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7944654	0.84[EUR][1000 genomes]
rs8191	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs958332	0.82[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34128000-34168000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:34128200-34169800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:34128600-34173200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
4	chr11:34128600-34176400	Strong transcription	Fetal Stomach	stomach
5	chr11:34128800-34163600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr11:34128800-34178000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:34129000-34170000	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:34129000-34177400	Strong transcription	Osteobl	bone
9	chr11:34129000-34177800	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:34129200-34166400	Strong transcription	Primary B cells from peripheral blood	blood
11	chr11:34129200-34168200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr11:34129200-34169800	Strong transcription	H1 Cell Line	embryonic stem cell
13	chr11:34129200-34169800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:34129200-34174600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:34129200-34177800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:34129400-34172600	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr11:34129400-34173400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:34129400-34175600	Strong transcription	Fetal Thymus	thymus
19	chr11:34129600-34160600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:34129600-34167200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr11:34129600-34168600	Strong transcription	Placenta	Placenta
22	chr11:34129600-34169400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:34129600-34170600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:34129600-34171400	Strong transcription	Fetal Muscle Trunk	muscle
25	chr11:34129600-34171800	Strong transcription	Fetal Muscle Leg	muscle
26	chr11:34129600-34172800	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr11:34129600-34175000	Strong transcription	Brain Anterior Caudate	brain
28	chr11:34129600-34177200	Strong transcription	Skeletal Muscle Female	skeletal muscle
29	chr11:34129600-34178200	Strong transcription	Liver	Liver
30	chr11:34129800-34163800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:34129800-34167200	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr11:34129800-34169800	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr11:34129800-34170000	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr11:34129800-34170000	Strong transcription	NH-A	brain
35	chr11:34129800-34171800	Strong transcription	Duodenum Mucosa	Duodenum
36	chr11:34129800-34172000	Strong transcription	Fetal Intestine Large	intestine
37	chr11:34129800-34172800	Strong transcription	Ovary	ovary
38	chr11:34129800-34173200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr11:34129800-34173200	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr11:34129800-34175000	Strong transcription	Primary T cells from cord blood	blood
41	chr11:34129800-34175000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr11:34129800-34175600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr11:34130000-34171000	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr11:34130000-34172400	Strong transcription	HepG2	liver
45	chr11:34130000-34173600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr11:34130000-34174600	Strong transcription	Dnd41	blood
47	chr11:34130000-34177000	Strong transcription	Sigmoid Colon	Sigmoid Colon
48	chr11:34130000-34181800	Strong transcription	A549	lung
49	chr11:34130200-34172800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr11:34130200-34173200	Strong transcription	Primary T helper cells PMA-I stimulated	--

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