Variant report

Variant	rs59978955
Chromosome Location	chr11:34093122-34093123
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34091898..34094215-chr11:34097779..34099653,2	MCF-7	breast:
2	chr11:34082446..34085932-chr11:34091734..34095949,3	MCF-7	breast:
3	chr11:33895130..33897076-chr11:34091918..34094690,2	K562	blood:
4	chr11:34070782..34075925-chr11:34090363..34101891,14	MCF-7	breast:
5	chr11:34091281..34093179-chr11:34117497..34119353,2	K562	blood:

Variant related genes	Relation type
ENSG00000135387	Chromatin interaction

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10047428	0.91[EUR][1000 genomes]
rs10047487	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10501132	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10501133	0.80[AMR][1000 genomes]
rs10836150	0.80[EUR][1000 genomes]
rs11552143	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16925114	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16925115	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16925121	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925126	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925134	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925147	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925153	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16925155	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925160	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16925163	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16925167	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16925170	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16925173	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16925175	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16925177	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16925181	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16925182	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16925184	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16925219	0.85[AMR][1000 genomes]
rs16926099	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17367679	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17699090	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17699505	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17699517	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17699883	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17700132	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17700360	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17700714	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17700877	0.80[AMR][1000 genomes]
rs17701015	0.80[AMR][1000 genomes]
rs17771981	0.93[EUR][1000 genomes]
rs17777885	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17777985	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17778417	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17778759	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1883958	0.82[EUR][1000 genomes]
rs2004272	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2421456	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2421457	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2421459	0.82[EUR][1000 genomes]
rs2467392	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2467393	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2473929	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2473932	0.85[AMR][1000 genomes]
rs2957481	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2957509	0.82[EUR][1000 genomes]
rs2957514	0.80[EUR][1000 genomes]
rs2982587	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2982619	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs36117528	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4074368	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4237663	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4587708	0.91[EUR][1000 genomes]
rs4755357	0.88[EUR][1000 genomes]
rs4755359	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4756101	0.93[EUR][1000 genomes]
rs56693007	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56696374	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56973150	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57330513	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57492451	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57636521	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58696677	0.81[AFR][1000 genomes]
rs58755000	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59158919	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59249605	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59359577	0.80[AMR][1000 genomes]
rs59518134	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59650719	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59972955	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60015864	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60494596	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60549862	0.85[AMR][1000 genomes]
rs60700110	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61171154	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6484694	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7104352	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7127581	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73497030	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73497035	0.91[EUR][1000 genomes]
rs73497050	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73497064	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73500434	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73501009	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73501017	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73501018	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73501023	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73501037	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73501038	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73501048	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73501059	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73501064	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73501065	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73501069	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73501097	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7483997	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7925527	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7933297	0.80[AMR][1000 genomes]
rs7944654	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8191	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs958332	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34075400-34094200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:34075400-34094400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:34075400-34103800	Weak transcription	Aorta	Aorta
4	chr11:34075600-34093600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:34075600-34100200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:34075800-34093600	Weak transcription	HSMMtube	muscle
7	chr11:34077000-34100600	Weak transcription	Esophagus	oesophagus
8	chr11:34077400-34094800	Weak transcription	Colonic Mucosa	Colon
9	chr11:34079000-34094000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr11:34079000-34095000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:34079000-34126600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:34083400-34126600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:34083600-34095000	Weak transcription	Lung	lung
14	chr11:34083600-34124800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:34085200-34093200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr11:34085200-34093200	Weak transcription	Thymus	Thymus
17	chr11:34085200-34093200	Weak transcription	HMEC	breast
18	chr11:34085200-34093600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr11:34085400-34094800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:34086600-34093400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:34087800-34094400	Weak transcription	Brain Germinal Matrix	brain
22	chr11:34088400-34093200	Weak transcription	Placenta	Placenta
23	chr11:34088600-34110800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr11:34088600-34124600	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr11:34088800-34095800	Strong transcription	Hela-S3	cervix
26	chr11:34088800-34124000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr11:34089600-34104000	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr11:34089800-34093400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr11:34089800-34093400	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr11:34089800-34095400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr11:34089800-34096200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr11:34090000-34093200	Weak transcription	Primary B cells from peripheral blood	blood
33	chr11:34090000-34093200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr11:34090000-34093400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr11:34090000-34093600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr11:34090000-34093600	Weak transcription	Fetal Muscle Leg	muscle
37	chr11:34090000-34093600	Weak transcription	Left Ventricle	heart
38	chr11:34090000-34093600	Weak transcription	Ovary	ovary
39	chr11:34090000-34093800	Weak transcription	NHLF	lung
40	chr11:34090000-34094000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr11:34090000-34094200	Weak transcription	Fetal Brain Male	brain
42	chr11:34090000-34094800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr11:34090000-34096000	Strong transcription	HSMM	muscle
44	chr11:34090000-34096200	Weak transcription	Spleen	Spleen
45	chr11:34090000-34096400	Weak transcription	Small Intestine	intestine
46	chr11:34090000-34097800	Weak transcription	Pancreas	Pancrea
47	chr11:34090000-34100400	Weak transcription	Psoas Muscle	Psoas
48	chr11:34090000-34100600	Weak transcription	Right Ventricle	heart
49	chr11:34090200-34093200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr11:34090200-34093200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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