Variant report

Variant	rs16925182
Chromosome Location	chr11:34132964-34132965
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34106069..34110524-chr11:34130126..34133963,4	K562	blood:

Extended variants
information (count: 118 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs10047428	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10047487	0.87[EUR][1000 genomes]
rs10501132	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10501133	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10836150	0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs11552143	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12418412	1.00[YRI][hapmap]
rs16925114	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16925115	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16925121	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925126	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925134	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925147	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925153	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16925155	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16925160	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925163	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925167	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925170	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925173	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925175	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925177	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925181	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925183	0.85[ASW][hapmap];1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs16925184	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925219	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16926099	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17367679	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17699090	0.86[EUR][1000 genomes]
rs17699505	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17699517	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17699883	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17700132	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17700360	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17700714	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17700877	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17701015	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17771070	0.91[GIH][hapmap];1.00[MEX][hapmap]
rs17771981	0.86[EUR][1000 genomes]
rs17777885	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17777985	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17778417	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17778759	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1883958	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2004272	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2421456	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2421457	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2421459	0.89[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs2467392	1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2467393	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2473929	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2473932	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2957481	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2957509	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2957514	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs2957518	0.82[GIH][hapmap]
rs2982587	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2982617	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2982619	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36117528	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4074368	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4237663	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs4587708	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs4755357	0.84[EUR][1000 genomes]
rs4755359	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs4756095	1.00[GIH][hapmap];0.83[TSI][hapmap]
rs4756101	0.82[EUR][1000 genomes]
rs4756109	0.90[CEU][hapmap]
rs56693007	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56696374	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56973150	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57330513	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57492451	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57636521	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs58696677	0.98[AFR][1000 genomes]
rs58755000	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59158919	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59249605	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59359577	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59518134	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59650719	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59972955	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59978955	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60015864	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60494596	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60549862	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60700110	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61171154	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6484694	0.84[EUR][1000 genomes]
rs7104352	0.90[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7125948	1.00[YRI][hapmap]
rs7127581	0.86[EUR][1000 genomes]
rs73497030	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs73497035	0.84[EUR][1000 genomes]
rs73497050	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs73497064	0.86[EUR][1000 genomes]
rs73500434	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73501009	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73501017	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73501018	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73501023	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73501037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73501038	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73501048	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73501059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73501064	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73501065	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73501069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73501097	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7483997	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7925202	0.85[ASW][hapmap];1.00[YRI][hapmap]
rs7925527	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7933297	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7944654	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7951306	0.85[ASW][hapmap];1.00[YRI][hapmap]
rs7951527	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs8191	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs958332	0.90[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs16925182	NAT10	cis	cerebellum	SCAN
rs16925182	NAT10	cis	parietal	SCAN
rs16925182	ABTB2	cis	parietal	SCAN
rs16925182	NBAS	trans	parietal	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34128000-34133200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:34128000-34168000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:34128200-34169800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:34128600-34133200	Weak transcription	Fetal Heart	heart
5	chr11:34128600-34133400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr11:34128600-34173200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr11:34128600-34176400	Strong transcription	Fetal Stomach	stomach
8	chr11:34128800-34138800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:34128800-34163600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr11:34128800-34178000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:34129000-34133000	Weak transcription	Stomach Mucosa	stomach
12	chr11:34129000-34147200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:34129000-34150200	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr11:34129000-34157200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
15	chr11:34129000-34170000	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr11:34129000-34177400	Strong transcription	Osteobl	bone
17	chr11:34129000-34177800	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr11:34129200-34135600	Strong transcription	Skeletal Muscle Male	skeletal muscle
19	chr11:34129200-34151200	Strong transcription	Stomach Smooth Muscle	stomach
20	chr11:34129200-34166400	Strong transcription	Primary B cells from peripheral blood	blood
21	chr11:34129200-34168200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr11:34129200-34169800	Strong transcription	H1 Cell Line	embryonic stem cell
23	chr11:34129200-34169800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:34129200-34174600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:34129200-34177800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:34129400-34151200	Strong transcription	Muscle Satellite Cultured Cells	--
27	chr11:34129400-34172600	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr11:34129400-34173400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr11:34129400-34175600	Strong transcription	Fetal Thymus	thymus
30	chr11:34129600-34134800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:34129600-34135600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
32	chr11:34129600-34137400	Strong transcription	Fetal Brain Female	brain
33	chr11:34129600-34137600	Strong transcription	Colon Smooth Muscle	Colon
34	chr11:34129600-34137800	Strong transcription	H9 Cell Line	embryonic stem cell
35	chr11:34129600-34145200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr11:34129600-34145400	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr11:34129600-34149600	Strong transcription	NHEK	skin
38	chr11:34129600-34150200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:34129600-34160600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr11:34129600-34167200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr11:34129600-34168600	Strong transcription	Placenta	Placenta
42	chr11:34129600-34169400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr11:34129600-34170600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:34129600-34171400	Strong transcription	Fetal Muscle Trunk	muscle
45	chr11:34129600-34171800	Strong transcription	Fetal Muscle Leg	muscle
46	chr11:34129600-34172800	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr11:34129600-34175000	Strong transcription	Brain Anterior Caudate	brain
48	chr11:34129600-34177200	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr11:34129600-34178200	Strong transcription	Liver	Liver
50	chr11:34129800-34133200	Strong transcription	HSMM	muscle

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