Variant report

Variant	rs2957518
Chromosome Location	chr11:34154641-34154642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34150014..34151574-chr11:34153165..34155725,2	K562	blood:
2	chr11:34139078..34141713-chr11:34152485..34154764,2	MCF-7	breast:
3	chr11:34152233..34154763-chr11:34161717..34164077,2	K562	blood:

Variant related genes	Relation type
ENSG00000135372	Chromatin interaction

rs_ID	r²[population]
rs10836150	0.90[GIH][hapmap]
rs11032481	0.82[LWK][hapmap]
rs16925114	0.82[GIH][hapmap]
rs16925153	0.82[GIH][hapmap]
rs16925167	0.82[GIH][hapmap]
rs16925170	0.82[GIH][hapmap]
rs16925175	0.82[GIH][hapmap]
rs16925182	0.82[GIH][hapmap]
rs16925184	0.82[GIH][hapmap]
rs17367679	0.82[GIH][hapmap]
rs17699517	0.82[GIH][hapmap]
rs17700360	0.82[GIH][hapmap]
rs17700714	0.82[GIH][hapmap]
rs17771070	0.90[GIH][hapmap]
rs17778759	0.82[GIH][hapmap]
rs2421459	0.90[GIH][hapmap]
rs2467392	0.82[GIH][hapmap]
rs2957509	0.82[GIH][hapmap]
rs2957514	0.82[GIH][hapmap]
rs2982587	0.82[GIH][hapmap]
rs2982619	0.82[GIH][hapmap]
rs4587708	0.82[GIH][hapmap]
rs4756095	0.82[GIH][hapmap]

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34128000-34168000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:34128200-34169800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:34128600-34173200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
4	chr11:34128600-34176400	Strong transcription	Fetal Stomach	stomach
5	chr11:34128800-34163600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr11:34128800-34178000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:34129000-34157200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
8	chr11:34129000-34170000	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:34129000-34177400	Strong transcription	Osteobl	bone
10	chr11:34129000-34177800	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr11:34129200-34166400	Strong transcription	Primary B cells from peripheral blood	blood
12	chr11:34129200-34168200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr11:34129200-34169800	Strong transcription	H1 Cell Line	embryonic stem cell
14	chr11:34129200-34169800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:34129200-34174600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:34129200-34177800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:34129400-34172600	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr11:34129400-34173400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:34129400-34175600	Strong transcription	Fetal Thymus	thymus
20	chr11:34129600-34160600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:34129600-34167200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr11:34129600-34168600	Strong transcription	Placenta	Placenta
23	chr11:34129600-34169400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:34129600-34170600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr11:34129600-34171400	Strong transcription	Fetal Muscle Trunk	muscle
26	chr11:34129600-34171800	Strong transcription	Fetal Muscle Leg	muscle
27	chr11:34129600-34172800	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr11:34129600-34175000	Strong transcription	Brain Anterior Caudate	brain
29	chr11:34129600-34177200	Strong transcription	Skeletal Muscle Female	skeletal muscle
30	chr11:34129600-34178200	Strong transcription	Liver	Liver
31	chr11:34129800-34163800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr11:34129800-34167200	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr11:34129800-34169800	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr11:34129800-34170000	Strong transcription	Rectal Mucosa Donor 31	rectum
35	chr11:34129800-34170000	Strong transcription	NH-A	brain
36	chr11:34129800-34171800	Strong transcription	Duodenum Mucosa	Duodenum
37	chr11:34129800-34172000	Strong transcription	Fetal Intestine Large	intestine
38	chr11:34129800-34172800	Strong transcription	Ovary	ovary
39	chr11:34129800-34173200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr11:34129800-34173200	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr11:34129800-34175000	Strong transcription	Primary T cells from cord blood	blood
42	chr11:34129800-34175000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr11:34129800-34175600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr11:34130000-34171000	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr11:34130000-34172400	Strong transcription	HepG2	liver
46	chr11:34130000-34173600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr11:34130000-34174600	Strong transcription	Dnd41	blood
48	chr11:34130000-34177000	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr11:34130000-34181800	Strong transcription	A549	lung
50	chr11:34130200-34172800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links