Variant report

Variant	rs11032481
Chromosome Location	chr11:34025053-34025054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34022409..34025980-chr11:34071309..34074224,5	MCF-7	breast:
2	chr11:34022810..34025510-chr11:34071927..34075511,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135387	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10082562	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10742311	0.82[EUR][1000 genomes]
rs10768043	0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10836144	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10836145	0.99[ASN][1000 genomes]
rs10836146	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10836147	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10836149	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11032482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032485	0.99[ASN][1000 genomes]
rs11032486	0.89[ASN][1000 genomes]
rs11032487	0.99[ASN][1000 genomes]
rs11032489	0.88[ASN][1000 genomes]
rs11032491	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs12272003	0.89[ASN][1000 genomes]
rs12277616	0.91[ASN][1000 genomes]
rs12285326	0.91[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs12292366	0.95[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs12418479	0.86[CHB][hapmap]
rs12421153	0.86[CHB][hapmap]
rs12576882	0.99[ASN][1000 genomes]
rs12577490	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12787303	0.85[CHB][hapmap]
rs12789531	0.95[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs12799109	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2139177	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2957518	0.82[LWK][hapmap]
rs3852514	0.85[CEU][hapmap];0.95[MEX][hapmap];0.81[EUR][1000 genomes]
rs4348871	0.81[EUR][1000 genomes]
rs4756093	0.86[CHB][hapmap]
rs7120520	0.85[CEU][hapmap];0.95[MEX][hapmap];0.82[EUR][1000 genomes]
rs7120707	0.86[CHB][hapmap];0.80[GIH][hapmap]
rs7121633	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7122747	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7952389	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11032481	CCDC73	cis	cerebellum	SCAN
rs11032481	C11orf41	cis	cerebellum	SCAN
rs11032481	ELP4	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34019600-34025400	Weak transcription	Fetal Intestine Large	intestine
2	chr11:34019800-34026000	Weak transcription	HepG2	liver
3	chr11:34020400-34028000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:34024400-34025400	Weak transcription	Fetal Intestine Small	intestine
5	chr11:34024600-34025200	Bivalent Enhancer	Duodenum Mucosa	Duodenum

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