Variant report

Variant	rs12787303
Chromosome Location	chr11:34018570-34018571
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:34016657..34020888-chr11:34127780..34130463,3	K562	blood:
2	chr11:34017204..34020055-chr11:34021200..34023906,3	K562	blood:
3	chr11:34017302..34020894-chr11:34072155..34075321,5	MCF-7	breast:
4	chr11:34017030..34019308-chr11:34075054..34077905,2	K562	blood:
5	chr11:34018324..34019191-chr11:34195609..34196174,2	K562	blood:
6	chr11:34018236..34019254-chr11:34072775..34073515,3	MCF-7	breast:
7	chr11:34018085..34021579-chr11:34051099..34053696,3	K562	blood:
8	chr11:34018304..34019124-chr11:34380429..34381489,5	MCF-7	breast:
9	chr11:34018287..34020760-chr11:34051667..34053419,2	K562	blood:
10	chr11:34017694..34021670-chr11:34071468..34075941,12	MCF-7	breast:
11	chr11:34016768..34019238-chr11:34070653..34073628,2	K562	blood:
12	chr11:34018480..34020975-chr11:34073812..34076765,2	K562	blood:
13	chr11:34017787..34020470-chr11:34083587..34085765,2	K562	blood:
14	chr11:33998966..34000482-chr11:34017921..34020175,2	MCF-7	breast:
15	chr11:34017295..34020752-chr11:34087860..34091315,4	K562	blood:
16	chr11:34006320..34008522-chr11:34018561..34020170,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000135387	Chromatin interaction
ENSG00000135372	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10082562	0.81[ASN][1000 genomes]
rs10768043	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs10836141	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10836145	0.83[AMR][1000 genomes]
rs11032474	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11032475	0.83[ASN][1000 genomes]
rs11032481	0.85[CHB][hapmap]
rs11032485	0.83[AMR][1000 genomes]
rs11032487	0.83[AMR][1000 genomes]
rs12272003	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12277616	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12282240	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12285326	0.96[CEU][hapmap];0.95[CHB][hapmap];0.82[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12290109	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12292366	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12418479	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12421153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12421249	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12576882	0.83[AMR][1000 genomes]
rs12577490	0.82[CHB][hapmap]
rs12789531	0.88[CEU][hapmap];0.90[CHB][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12795523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12797090	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12799109	1.00[CEU][hapmap];0.86[CHB][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1518918	0.81[CEU][hapmap]
rs35836121	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4316483	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4755356	0.88[ASN][1000 genomes]
rs4756093	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7112270	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7120707	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7121633	0.81[CHB][hapmap]

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34013400-34018800	Weak transcription	Dnd41	blood
2	chr11:34016400-34018800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:34016400-34020400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:34017800-34019600	Enhancers	Fetal Intestine Large	intestine
5	chr11:34018200-34018600	Flanking Active TSS	Duodenum Mucosa	Duodenum
6	chr11:34018200-34018600	Flanking Bivalent TSS/Enh	HepG2	liver
7	chr11:34018200-34019200	Enhancers	Brain Cingulate Gyrus	brain
8	chr11:34018200-34019400	Bivalent Enhancer	Fetal Stomach	stomach
9	chr11:34018200-34019600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:34018200-34019600	Enhancers	Brain Germinal Matrix	brain
11	chr11:34018400-34018600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:34018400-34018600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:34018400-34018600	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
14	chr11:34018400-34018600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
15	chr11:34018400-34018600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:34018400-34018600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:34018400-34018600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:34018400-34018600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:34018400-34018600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:34018400-34018600	Flanking Active TSS	Brain Angular Gyrus	brain
21	chr11:34018400-34018600	Flanking Active TSS	Brain Hippocampus Middle	brain
22	chr11:34018400-34018600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
23	chr11:34018400-34018600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
24	chr11:34018400-34018600	Bivalent Enhancer	Fetal Muscle Leg	muscle
25	chr11:34018400-34018600	Flanking Bivalent TSS/Enh	Rectal Smooth Muscle	rectum
26	chr11:34018400-34018600	Bivalent Enhancer	Stomach Mucosa	stomach
27	chr11:34018400-34018600	Flanking Active TSS	K562	blood
28	chr11:34018400-34018600	Flanking Active TSS	NHEK	skin
29	chr11:34018400-34018600	Bivalent/Poised TSS	Osteobl	bone
30	chr11:34018400-34018800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
31	chr11:34018400-34018800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
32	chr11:34018400-34018800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr11:34018400-34018800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
34	chr11:34018400-34018800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr11:34018400-34018800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr11:34018400-34018800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
37	chr11:34018400-34018800	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
38	chr11:34018400-34018800	Flanking Active TSS	Colonic Mucosa	Colon
39	chr11:34018400-34018800	Active TSS	Colon Smooth Muscle	Colon
40	chr11:34018400-34018800	Active TSS	Fetal Intestine Small	intestine
41	chr11:34018400-34018800	Active TSS	Rectal Mucosa Donor 31	rectum
42	chr11:34018400-34018800	Enhancers	HMEC	breast
43	chr11:34018400-34019000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
44	chr11:34018400-34019000	Enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr11:34018400-34019000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr11:34018400-34019000	Active TSS	Brain Anterior Caudate	brain
47	chr11:34018400-34019000	Active TSS	Brain Inferior Temporal Lobe	brain
48	chr11:34018400-34019000	Flanking Active TSS	Brain Substantia Nigra	brain
49	chr11:34018400-34019000	Active TSS	Rectal Mucosa Donor 29	rectum
50	chr11:34018400-34019000	Active TSS	Right Atrium	heart

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