Variant report

Variant	rs11032474
Chromosome Location	chr11:34010543-34010544
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:33877952..33881017-chr11:34009873..34013165,3	K562	blood:
2	chr11:34006736..34012057-chr11:34071931..34075352,5	K562	blood:
3	chr11:34005894..34011017-chr11:34129149..34133359,4	K562	blood:
4	chr11:33856097..33858302-chr11:34008907..34011375,2	MCF-7	breast:
5	chr11:33857237..33859734-chr11:34009621..34012332,2	K562	blood:
6	chr11:34008766..34011082-chr11:34071931..34074716,3	K562	blood:

Variant related genes	Relation type
ENSG00000135372	Chromatin interaction
ENSG00000135387	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10768043	0.82[CHB][hapmap]
rs10836141	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11032475	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12282240	0.83[ASN][1000 genomes]
rs12285326	0.82[CHB][hapmap]
rs12290109	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12292366	0.82[CHB][hapmap]
rs12418479	0.84[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12421153	0.86[CHB][hapmap];0.84[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12421249	0.90[ASN][1000 genomes]
rs12787303	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12788758	0.86[MEX][hapmap]
rs12789531	0.90[GIH][hapmap]
rs12795523	0.82[ASN][1000 genomes]
rs12797090	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1518918	0.86[MEX][hapmap]
rs35836121	0.83[ASN][1000 genomes]
rs4316483	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4755356	0.81[AMR][1000 genomes]
rs4756093	0.84[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.92[TSI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7112270	0.81[ASN][1000 genomes]
rs7120707	0.81[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11032474	FBXO3	cis	cerebellum	SCAN
rs11032474	C11orf41	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34006400-34018200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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